Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLTC (clathrin heavy polypeptide)

Identity

Other namesclathrin heavy chain
KIAAOO34
CLH-17
Hugo CLTC
Location 17q23
Note must not be confused with CLTCL1 (clathrin heavy polypeptide-like 1).

DNA/RNA

Transcription 32 exons, 6111 bp mRNA

Protein

Description Clathrin is the major protein constituent of the coat that surrounds organelles (cytoplasmic vesicles) to mediate selective protein transport. Clathrin coats are involved in receptor-mediated endocytosis and intracellular trafficking and recycling of receptors, which accounts for its characteristic punctate cytoplasmic and perinuclear cellular distribution. Structurally, clathrin is a triskelion (three-legged) shaped protein complex that is composed of a trimer of heavy chains (CLTC) each bound to a single light chain. CLTC is a 1675 amino acid residue protein encoded by a gene consisting of 32 exons. Its known domains include a N-terminal globular domain (residues 1-494) that interacts with adaptor proteins (AP-1, AP-2, b-arrestin), a light chain-binding region (residues 1074-1552), and a trimerization domain (residues 1550-1600) near the C-terminus.
Localisation Cytoplasmic vesicles
Function mediate endocytosis of transmembrane receptors.

Implicated in

Entity Anaplasic large cell lymphoma (ALCL) with t(2;17)(p23;q23) --> ALK - CLTC
Disease ALCL are high grade non Hodgkin lymphomas; ALK+ ALCL are ALCL where ALK is involved in a fusion gene; ALK+ ALCL represent 50 to 60 % of ALCL cases (they are CD30+, ALK+;); belong to the "cytoplasmic ALK+" subset.
Prognosis Although presenting as a high grade tumour, a 80% five yr survival is associated with this anomaly
Hybrid/Mutated Gene 5' CLTC - 3' ALK
Abnormal Protein NH2 CLTC - COOH ALK
  
Entity Inflammatory myofibroblastic tumors with t(2;17)(p23;q23)
Note In these tumors, the fusion point in CLTC is identical, being at amino acid 1634 (corresponding to the 3' end of exon 31 of CLTC), such that almost all of CLTC is included in the fusion protein, including its trimerization domain . As a fusion partner, CLTC has been postulated to provide CLTC-ALK with deregulated expression driven by its constitutively activated promoter and constitutive oligomerization of the chimeric protein via the CLTC multimerization domains normally used for clathrin coat assembly. Since ALK is a tyrosine kinase that is activated by cross-phosphorylation following ligand binding, CLTC-ALK-induced oligomerization may result in a constitutively activated ALK tyrosine kinase domain. In this sense, CLTC is likely to function in CLTC-ALK as other prototypical "dimerizing translocation partners" in fusions involving tyrosine kinase genes.
Disease rare soft tissue tumour found in children and young adults
Prognosis good prognosis
Hybrid/Mutated Gene 5' CLTC - 3' ALK
  
Entity Xp11 renal translocation carcinoma with t(X;17)(p11;q23)
Note In the CLTC-TFE3 fusion, the fusion point on CLTC is at amino acid 932 (corresponding to the end of exon 17), thereby excluding the CLTC trimerization domain from the predicted fusion protein. As in other TFE3 gene fusions, the nuclear localization and DNA binding domains of TFE3 are retained in CLTC-TFE3. Based on these features and existing data on other TFE3 fusion proteins, CLTC-TFE3 may act as an aberrant transcription factor, with the CLTC promoter driving constitutive expression.
Disease rare renal carcinoma (single case report)
Prognosis Unknown prognosis
Hybrid/Mutated Gene 5' CLTC 3'TFE3
  

Breakpoints

 

External links

Nomenclature
HugoCLTC
GDBCLTC
Entrez_GeneCLTC  1213  clathrin, heavy chain (Hc)
Cards
AtlasCLTCID360
GeneCardsCLTC
EnsemblCLTC [Search_View]   ENSG00000141367 [Gene_View]
GenatlasCLTC
GeneLynxCLTC
eGenomeCLTC
euGene1213
Genomic and cartography
GoldenPathCLTC  -  17q23   chr17:55051832-55129099 +  17q11-qter   [Description]    (hg18-Mar_2006)
EnsemblCLTC - 17q11-qter [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneCLTC
Gene and transcription
GenbankAB073891 [ ENTREZ ]
GenbankAK127134 [ ENTREZ ]
GenbankBC015854 [ ENTREZ ]
GenbankBC036430 [ ENTREZ ]
GenbankBC051800 [ ENTREZ ]
RefSeqNM_004859 [ SRS ]    NM_004859 [ ENTREZ ]
RefSeqAC_000060 [ SRS ]    AC_000060 [ ENTREZ ]
RefSeqNC_000017 [ SRS ]    NC_000017 [ ENTREZ ]
RefSeqNT_010783 [ SRS ]    NT_010783 [ ENTREZ ]
RefSeqNW_926894 [ SRS ]    NW_926894 [ ENTREZ ]
AceViewCLTC AceView - NCBI
UnigeneHs.663896 [ SRS ]    Hs.663896 [ NCBI ]     HS663896 [ spliceNest ]
Fast-db13452 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ00610 [ SRS]    Q00610 [ EXPASY ]     Q00610 [ INTERPRO ]
InterproIPR000547 Clathrin_H-chain/VPS_repeat [ SRS ]    IPR000547 Clathrin_H-chain/VPS_repeat [ EBI ]
InterproIPR015348 Clathrin_H-chain_linker_core [ SRS ]    IPR015348 Clathrin_H-chain_linker_core [ EBI ]
InterproIPR001473 Clathrin_H-chain_propeller_N [ SRS ]    IPR001473 Clathrin_H-chain_propeller_N [ EBI ]
InterproIPR011990 TPR-like_helical [ SRS ]    IPR011990 TPR-like_helical [ EBI ]
CluSTrQ00610
PfamPF00637 Clathrin [ SRS ]    PF00637 Clathrin [ Sanger ]    pfam00637 [ NCBI-CDD ]
PfamPF09268 Clathrin-link [ SRS ]    PF09268 Clathrin-link [ Sanger ]    pfam09268 [ NCBI-CDD ]
PfamPF01394 Clathrin_propel [ SRS ]    PF01394 Clathrin_propel [ Sanger ]    pfam01394 [ NCBI-CDD ]
SmartSM00299 CLH [EMBL]
BlocksQ00610
HPRD00350
Protein Interaction databases
DIPQ00610
IntActQ00610
Polymorphism : SNP, mutations, diseases
OMIM118955    [ map ]   
GENECLINICS118955
SNPCLTC [dbSNP-NCBI]  
SNPNM_004859 [SNP-NCI]  
SNPCLTC [GeneSNPs - Utah]  CLTC] [HGBASE - SRS]
HAPMAPCLTC [HAPMAP]  
COSMICCLTC [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDCLTC
General knowledge
Family BrowserCLTC [UCSC Family Browser]
SOURCENM_004859
SMDHs.663896
SAGEHs.663896
GOstructural molecule activity [Amigo]  structural molecule activity
GOprotein binding [Amigo]  protein binding
GOprotein complex assembly [Amigo]  protein complex assembly
GOintracellular protein transport [Amigo]  intracellular protein transport
GOprotein transporter activity [Amigo]  protein transporter activity
GOmembrane [Amigo]  membrane
GOvesicle-mediated transport [Amigo]  vesicle-mediated transport
GOclathrin coat of trans-Golgi network vesicle [Amigo]  clathrin coat of trans-Golgi network vesicle
GOclathrin coat of coated pit [Amigo]  clathrin coat of coated pit
GOcytoplasmic vesicle membrane [Amigo]  cytoplasmic vesicle membrane
GOcytoplasmic vesicle [Amigo]  cytoplasmic vesicle
GOmelanosome [Amigo]  melanosome
KEGGHuntington's disease
PubGeneCLTC
TreeFamCLTC
CTD1213 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeCLTC Related clones (RZPD - Berlin)
PubMed
PubMed67 Pubmed reference(s) in LocusLink

Bibliography

Structural domains of clathrin heavy chains.
Kirchhausen T, Harrison SC
The Journal of cell biology. 1984 ; 99 (5) : 1725-1734.
PMID 6386825
 
Clathrin heavy chain: molecular cloning and complete primary structure.
Kirchhausen T, Harrison SC, Chow EP, Mattaliano RJ, Ramachandran KL, Smart J, Brosius J
Proceedings of the National Academy of Sciences of the United States of America. 1987 ; 84 (24) : 8805-8809.
PMID 3480512
 
Human clathrin heavy chain (CLTC): partial molecular cloning, expression, and mapping of the gene to human chromosome 17q11-qter.
Dodge GR, Kovalszky I, McBride OW, Yi HF, Chu ML, Saitta B, Stokes DG, Iozzo RV
Genomics. 1991 ; 11 (1) : 174-178.
PMID 1765375
 
Clathrin-coated vesicle formation and protein sorting: an integrated process.
Schmid SL
Annual review of biochemistry. 1997 ; 66 : 511-548.
PMID 9242916
 
Clathrin self-assembly is mediated by a tandemly repeated superhelix.
Ybe JA, Brodsky FM, Hofmann K, Lin K, Liu SH, Chen L, Earnest TN, Fletterick RJ, Hwang PK
Nature. 1999 ; 399 (6734) : 371-375.
PMID 10360576
 
Clathrin.
Kirchhausen T
Annual review of biochemistry. 2000 ; 69 : 699-727.
PMID 10966473
 
Fusion of the ALK gene to the clathrin heavy chain gene, CLTC, in inflammatory myofibroblastic tumor.
Bridge JA, Kanamori M, Ma Z, Pickering D, Hill DA, Lydiatt W, Lui MY, Colleoni GW, Antonescu CR, Ladanyi M, Morris SW
The American journal of pathology. 2001 ; 159 (2) : 411-415.
PMID 11485898
 
Identification of novel fusion partners of ALK, the anaplastic lymphoma kinase, in anaplastic large-cell lymphoma and inflammatory myofibroblastic tumor.
Cools J, Wlodarska I, Somers R, Mentens N, Pedeutour F, Maes B, De Wolf-Peeters C, Pauwels P, Hagemeijer A, Marynen P
Genes, chromosomes & cancer. 2002 ; 34 (4) : 354-362.
PMID 12112524
 
A novel CLTC-TFE3 gene fusion in pediatric renal adenocarcinoma with t(X;17)(p11.2;q23).
Argani P, Lui MY, Couturier J, Bouvier R, Fournet JC, Ladanyi M
Oncogene. 2003 ; 22 (34) : 5374-5378.
PMID 12917640
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-2001Jean-Loup Huret
Genetics, Dept Medical Information, University of Poitiers, CHU Poitiers Hospital, F-86021 Poitiers, France
Updated04-2005Pedram Argani, Marc Ladanyi
Genetics, Dept Medical Information, University of Poitiers, CHU Poitiers Hospital, F-86021 Poitiers, France
Updated
The Johns Hopkins Hospital/ Surgical Pathology Weinberg Building, Room 2242, 4O1 N. Broadway, Baltimore, MD 21231-2410, USA

Citation

This paper should be referenced as such :
Huret JL . CLTC (clathrin heavy polypeptide). Atlas Genet Cytogenet Oncol Haematol. August 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/CLTCID360.html
Huret JL, Senon S . CLTC (clathrin heavy polypeptide). Atlas Genet Cytogenet Oncol Haematol. April 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/CLTCID360.html
Argani P, Ladanyi M . CLTC (clathrin heavy polypeptide). Atlas Genet Cytogenet Oncol Haematol. .
URL : http://AtlasGeneticsOncology.org/Genes/CLTCID360.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:22:47 2008


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