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DKK1 (dickkopf homolog 1 (Xenopus laevis))

Identity

Other namesDickkkopf-1
DKK-1
mdkk1
hDkk1
dickkopf (Xenopus laevis) homolog 1
SK
HGNC (Hugo) DKK1
Location 10q11.2
Location_base_pair Starts at 53744047 and ends at 53747423 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

 
  hDKK1 contains 3 introns and 4 exons (depictured in red).
Description Position: 53744064 - 53747595 ; Strand: ( + ). DKK1 is present in the contig NT008583 of Genebank; 4 Exon(s) all coding; DNA size 3.07 Kb.
Transcription 1 detected transcript; open reading frame: 1494 bp.

Protein

 
  Boxes in red:
1) Signal peptide (1 to 24 aa) 2) Low complexity region (45 to 57 aa) 3) Dickkopf domain (84 to 140 aa)
Description This gene encodes a protein that is a member of the dickkopf family. HDKK1 encode for a 266 amino acids (aa) protein. The calculated molecular weight is 28.7 KDa. Isoelectric point: 8.74. It possesses two clusters of ten cysteine residues separated by a linker region.
Expression Highly expressed in thyroid, small intestine, stomach, liver, placenta, pancreas, uterus, abdominal cavity, bladder and skin. Weaker expression has been detected in colon and spleen. It is involved in embryonic development through its inhibition of the WNT signaling pathway.
Localisation Extracellular region; secreted protein.
Function Inhibitor of the Wnt signaling pathway.

Implicated in

Entity Myeloma bone disease
Disease Patients with multiple myeloma frequently show painful bone lesions and in a recent analysis an increase in Dkk1 in the serum of those patients was noted, whose levels correlated with lesion occurrence. Bone marrow serum containing an elevated level of Dkk1 inhibited the differentiation of osteoblast precursor cells in vitro. Authors propose that Dkk1 produced by myeloma cells blocks osteoblast differentiation, thereby causing the lytic bone lesions. Supporting this idea, treatment of myeloma patients by autologous stem cell transplantation induces a decrease in Dkk1 levels, which is accompanied with elevation of bone formation markers. This raises again interesting therapeutic approaches for interference with the Lrp5/Lrp6-Dkk1 interaction.
  
Entity Cancer
Disease Different studies displayed changes of Dkk expression in tumor cell lines or tissues. In colon cancer, DKK-1 is a downstream target gene of beta-catenin, as it is in human ovarian endometrioid adenocarcinomas. DKK-1 is silenced in colon cancer by DNA hypermethylation and this correlates with advanced Dukes' stages of colorectal tumorigenesis. DKK-1 overexpression in colon cancer cells or Hela cells reduces colony formation and tumor growth in xenografts, pointing out to a tumor-suppressor function for DKK-1.
  
Entity Alzheimer
Disease DKK-1 has been also related to neurodegenerative disease. DKK-1 has been shown to be induced in degenerating neurons from Alzheimer patients as well as in cultured neurons challenged with beta-amyloid peptide. Hence, DKK-1 may promote apoptosis in Alzheimer neurons by enhancing Gsk3-mediated phosphorylation of the Tau protein in beta-amyloid-treated neurons.
  
Entity Epilepsia
Disease Recently, it has been shown that induction of the wnt inhibitor, dickkopf-1, is associated with neurodegeneration related to temporal lobe epilepsy. Strong DKK-1 expression was found in six bioptic samples and in one autoptic sample from patients with mesial temporal lobe epilepsy associated with hippocampal sclerosis. Furthermore, DKK-1 expression was undetectable or very low in autoptic samples from nonepileptic patients or in bioptic samples from patients with complex partial seizures without neuronal loss and/or reactive gliosis in the hippocampus.
  

External links

Nomenclature
HGNC (Hugo)DKK1   2891
Entrez_Gene (NCBI)DKK1  22943  dickkopf homolog 1 (Xenopus laevis)
Cards
AtlasDKK1ID44007ch10q11
GeneCards (Weizmann)DKK1
Ensembl (Hinxton)ENSG00000107984 [Gene_View]  DKK1 [Vega]
AceView (NCBI)DKK1
Genatlas (Paris)DKK1
euGene (Indiana)22943
SOURCE (Stanford)NM_012242
Genomic and cartography
GoldenPath (UCSC)DKK1  -  10q11.2   chr10:53744047-53747423 +  10q11.2   [Description]    (hg18-Mar_2006)
EnsemblDKK1 - 10q11.2 [CytoView]
Mapping of homologs : NCBIDKK1 [Mapview]
OMIM605189   
Gene and transcription
Gene : Genbank (Entrez)AF127563 AF177394 AK314902 AY359005 BC001539
Reference sequence (RefSeq transcript) :SRSNM_012242
Reference transcript : EntrezNM_012242
RefSeq genomic : SRSAC_000053 AC_000142 NC_000010 NT_008583 NW_001837985 NW_924796
RefSeq genomic : EntrezAC_000053 AC_000142 NC_000010 NT_008583 NW_001837985 NW_924796
Consensus coding sequences : CCDS NCBIDKK1
Cluster EST : UnigeneHs.40499 [ SRS ] Hs.40499 [ NCBI ]
Alternative Splicing : Fast-db (Paris)10599
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtO94907 (SRS) O94907 (Expasy) O94907 (Uniprot)
With graphics : InterProO94907
Splice isoforms : VarSplice FASTAO94907(VarSplice FASTA)
Domains : Interpro (SRS)Dickkopf_N   
Domains : Interpro (EBI)Dickkopf_N   
Related proteins : CluSTrO94907
Domain families : Pfam SRSDickkopf_N (PF04706)   
Domain families : Pfam SangerDickkopf_N (PF04706)   
Domain families : Pfam NCBIpfam04706   
Blocks (Seattle)O94907
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD05544
Protein Interaction databases
DIP (DOE-UCLA)O94907
IntAct (EBI)O94907
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIDKK1
SNP : GeneSNP UtahDKK1
SNP : HGBaseDKK1
Genetic variants : HAPMAPDKK1
Somatic Mutations in Cancer : COSMICDKK1 
Mutations and Diseases : HGMDDKK1
Hereditary diseases : OMIM605189   
Hereditary diseases : GENETests605189   
Diseases : Genetic AssociationDKK1
General knowledge
Homologs : HomoloGeneDKK1
Homology/Alignments : Family Browser UCSCDKK1
Phylogenetic Trees/Animal Genes : TreeFamDKK1
Chemical/Protein Interactions : CTD22943
Keywords Ontology : AmiGOsignal transducer activity  protein binding  extracellular region  plasma membrane  multicellular organismal development  growth factor activity  negative regulation of Wnt receptor signaling pathway  embryonic limb morphogenesis  forebrain development  low-density lipoprotein receptor binding  
Keywords Ontology : EGO-EBIsignal transducer activity  protein binding  extracellular region  plasma membrane  multicellular organismal development  growth factor activity  negative regulation of Wnt receptor signaling pathway  embryonic limb morphogenesis  forebrain development  low-density lipoprotein receptor binding  
Pathways : BIOCARTAWnt/LRP6 Signalling [Genes]   
Pathways : KEGGWnt signaling pathway
Other databases
Probes
Probes : ImagenesDKK1 Related clones (RZPD - Berlin)
Literature
PubMed72 Pubmed reference(s) in Entrez
PubGeneDKK1

Bibliography

Dickkopf-1 is a member of a new family of secreted proteins and functions in head induction.
Glinka A, Wu W, Delius H, Monaghan AP, Blumenstock C, Niehrs C
Nature. 1998 ; 391 (6665) : 357-362.
PMID 9450748
 
Novel mechanism of Wnt signalling inhibition mediated by Dickkopf-1 interaction with LRP6/Arrow.
Bafico A, Liu G, Yaniv A, Gazit A, Aaronson SA
Nature cell biology. 2001 ; 3 (7) : 683-686.
PMID 11433302
 
Head inducer Dickkopf-1 is a ligand for Wnt coreceptor LRP6.
Semˆ´nov MV, Tamai K, Brott BK, Kˆºhl M, Sokol S, He X
Current biology : CB. 2001 ; 11 (12) : 951-961.
PMID 11448771
 
The Wnt antagonist Dickkopf-1 is regulated by Bmp signaling and c-Jun and modulates programmed cell death.
Grotewold L, Rˆºther U
The EMBO journal. 2002 ; 21 (5) : 966-975.
PMID 11867524
 
The role of the Wnt-signaling antagonist DKK1 in the development of osteolytic lesions in multiple myeloma.
Tian E, Zhan F, Walker R, Rasmussen E, Ma Y, Barlogie B, Shaughnessy JD Jr
The New England journal of medicine. 2003 ; 349 (26) : 2483-2494.
PMID 14695408
 
Induction of Dickkopf-1, a negative modulator of the Wnt pathway, is associated with neuronal degeneration in Alzheimer's brain.
Caricasole A, Copani A, Caraci F, Aronica E, Rozemuller AJ, Caruso A, Storto M, Gaviraghi G, Terstappen GC, Nicoletti F
The Journal of neuroscience : the official journal of the Society for Neuroscience. 2004 ; 24 (26) : 6021-6027.
PMID 15229249
 
A functional genomics approach for the identification of putative tumor suppressor genes: Dickkopf-1 as suppressor of HeLa cell transformation.
Mikheev AM, Mikheeva SA, Liu B, Cohen P, Zarbl H
Carcinogenesis. 2004 ; 25 (1) : 47-59.
PMID 14555616
 
FGF-20 and DKK1 are transcriptional targets of beta-catenin and FGF-20 is implicated in cancer and development.
Chamorro MN, Schwartz DR, Vonica A, Brivanlou AH, Cho KR, Varmus HE
The EMBO journal. 2005 ; 24 (1) : 73-84.
PMID 15592430
 
The Wnt antagonist DICKKOPF-1 gene is a downstream target of beta-catenin/TCF and is downregulated in human colon cancer.
Gonzˆ°lez-Sancho JM, Aguilera O, Garcˆ‚a JM, Pendˆ°s-Franco N, Peˆ±a C, Cal S, Garcˆ‚a de Herreros A, Bonilla F, Muˆ±oz A
Oncogene. 2005 ; 24 (6) : 1098-1103.
PMID 15592505
 
Epigenetic inactivation of the Wnt antagonist DICKKOPF-1 (DKK-1) gene in human colorectal cancer.
Aguilera O, Fraga MF, Ballestar E, Paz MF, Herranz M, Espada J, Garcˆ‚a JM, Muˆ±oz A, Esteller M, Gonzˆ°lez-Sancho JM
Oncogene. 2006 ; 25 (29) : 4116-4121.
PMID 16491118
 
Serum concentrations of Dickkopf-1 protein are increased in patients with multiple myeloma and reduced after autologous stem cell transplantation.
Politou MC, Heath DJ, Rahemtulla A, Szydlo R, Anagnostopoulos A, Dimopoulos MA, Croucher PI, Terpos E
International journal of cancer. Journal international du cancer. 2006 ; 119 (7) : 1728-1731.
PMID 16646053
 
The Wnt antagonist DICKKOPF-1 gene is induced by 1alpha,25-dihydroxyvitamin D3 associated to the differentiation of human colon cancer cells.
Aguilera O, Peˆ±a C, Garcˆ‚a JM, Larriba MJ, Ordˆ„ˆ±ez-Morˆ°n P, Navarro D, Barbˆ°chano A, Lˆ„pez de Silanes I, Ballestar E, Fraga MF, Esteller M, Gamallo C, Bonilla F, Gonzˆ°lez-Sancho JM, Muˆ±oz A
Carcinogenesis. 2007 ; 28 (9) : 1877-1884.
PMID 17449905
 
Induction of the Wnt inhibitor, Dickkopf-1, is associated with neurodegeneration related to temporal lobe epilepsy.
Busceti CL, Biagioni F, Aronica E, Riozzi B, Storto M, Battaglia G, Giorgi FS, Gradini R, Fornai F, Caricasole A, Nicoletti F, Bruno V
Epilepsia. 2007 ; 48 (4) : 694-705.
PMID 17437412
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written04-2007Oscar Aguilera, Alberto Munoz
Instituto de Investigaciones Biomedicas "Alberto Sols", C/ Arturo Duperier n4, Madrid (Spain); oaguilera@iib.uam.es .

Citation

This paper should be referenced as such :
Aguilera O, Munoz A . DKK1 (dickkopf homolog 1 (Xenopus laevis)). Atlas Genet Cytogenet Oncol Haematol. April 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/DKK1ID44007ch10q11.html

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indexed on : Sat Jun 27 16:39:51 CEST 2009

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