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DYRK1B (dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B)

Identity

Other namesMIRK
HGNC (Hugo) DYRK1B
LocusID (NCBI) 9149
Location 19q13.2
Location_base_pair Starts at 40315990 and ends at 40324841 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

Description 11 exons and 10 introns encompassing 8.8kb.
Transcription Start at exon 1 encodes major active form p69, with alternative splicing in exon 9 giving rise to kinase inactive p62, and with alternative splicing within intron 1-2 giving rise to p75 in skeletal muscle.
Pseudogene None reported

Protein

Note Serine/threonine kinase activated by intramolecular phosphorylation on tyrosine.
Description 629 amino acids.
Expression Widely expressed at low levels, with elevated expression in muscle and testis.
Function Mediates myoblast differentiation.

Mutations

Note None in SW480 colon cancer cells, none reported.

Implicated in

Entity Ductal adenocarcinoma of the pancreas
Note Active kinase in pancreatic cancer cell lines.
Disease Present in 89% of cases by immunocytochemistry (25 of 28 cases)
Cytogenetics 19q13 amplicon in 10% of cases
Hybrid/Mutated Gene None reported
Abnormal Protein None reported
Oncogenesis Embryonic knockout is viable and has no reported phenotype
  
Entity Rhabdomyosarcoma
Note Overexpressed in 12 of 16 cases; active kinase in rhabdomyosarcoma cell lines
  

Breakpoints

Note None reported

External links

Nomenclature
HGNC (Hugo)DYRK1B   3092
Entrez_Gene (NCBI)DYRK1B  9149  dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
Cards
AtlasDYRK1BID43235ch19q13
GeneCards (Weizmann)DYRK1B
Ensembl (Hinxton)ENSG00000105204 [Gene_View]  chr19:40315990-40324841 [Contig_View]  DYRK1B [Vega]
AceView (NCBI)DYRK1B
Genatlas (Paris)DYRK1B
euGene (Indiana)9149
SOURCE (Stanford)NM_004714 NM_006483 NM_006484
Genomic and cartography
GoldenPath (UCSC)DYRK1B  -  19q13.2   chr19:40315990-40324841 -  19q12-q13.1   [Description]    (hg19-Feb_2009)
EnsemblDYRK1B - 19q12-q13.1 [CytoView]
Mapping of homologs : NCBIDYRK1B [Mapview]
OMIM604556   
Gene and transcription
Genbank (Entrez)AF205861 AK074971 AK302127 BC009688 BC018751
RefSeq transcript (SRS)NM_004714 NM_006483 NM_006484
RefSeq transcript (Entrez)NM_004714 NM_006483 NM_006484
RefSeq genomic (SRS)AC_000151 NC_000019 NT_011109 NW_001838496
RefSeq genomic (Entrez)AC_000151 NC_000019 NT_011109 NW_001838496
Consensus coding sequences : CCDS (NCBI)DYRK1B
Cluster EST : UnigeneHs.130988 [ SRS ] Hs.130988 [ NCBI ]
Alternative Splicing : Fast-db (Paris)12053
Alternative Splicing GalleryENSG00000105204
Gene ExpressionDYRK1B [ NCBI-GEO ]   DYRK1B [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y463 (SRS) Q9Y463 (Uniprot)
With graphics : InterProQ9Y463
Splice isoforms : SwissVarQ9Y463(Swissvar)
Domaine pattern : Prosite (SRS)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (SRS)Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Ser/Thr_dual-sp_kinase_dom    Ser/Thr_kinase_AS   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Ser/Thr_dual-sp_kinase_dom    Ser/Thr_kinase_AS   
Related proteins : CluSTrQ9Y463
Domain families : Pfam (SRS)Pkinase (PF00069)   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Blocks (Seattle)Q9Y463
Human Protein AtlasENSG00000105204
HPRD05188
IPIIPI00000352   IPI00332215   IPI00215873   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y463
IntAct (EBI)Q9Y463
FunCoupENSG00000105204
REACTOMEDYRK1B
BioGRIDDYRK1B
InParanoidQ9Y463
Interologous Interaction database Q9Y463
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)DYRK1B
SNP (GeneSNP Utah)DYRK1B
SNP : HGBaseDYRK1B
Genetic variants : HAPMAPDYRK1B
Somatic Mutations in Cancer : COSMICDYRK1B 
CONAN: Copy Number AnalysisDYRK1B 
Mutations and Diseases : HGMDDYRK1B
OMIM604556   
GENETests604556   
Disease Genetic AssociationDYRK1B
Huge Navigator DYRK1B [HugePedia]  DYRK1B [HugeCancerGEM]
Genomic VariantsDYRK1B
snp3D : Map Gene to Disease9149
General knowledge
Homologs : HomoloGeneDYRK1B
Homology/Alignments : Family Browser (UCSC)DYRK1B
Phylogenetic Trees/Animal Genes : TreeFamDYRK1B
Catalytic activity : Enzyme2.7.12.1 [ Enzyme-Expasy ]   2.7.12.1 [ Enzyme-SRS ]   2.7.12.1 [ IntEnz-EBI ]   2.7.12.1 [ BRENDA ]   2.7.12.1 [ KEGG ]   
Chemical/Protein Interactions : CTD9149
Chemical/Pharm GKB GenePA27549
Clinical trialDYRK1B
Cancer Resource (Charite)ENSG00000105204
Ontology : AmiGOnucleotide binding  transcription coactivator activity  protein kinase activity  protein serine/threonine kinase activity  protein serine/threonine/tyrosine kinase activity  protein tyrosine kinase activity  protein binding  ATP binding  nucleus  nucleolus  protein phosphorylation  myoblast fusion  intracellular membrane-bounded organelle  positive regulation of transcription, DNA-dependent  
Ontology : EGO-EBInucleotide binding  transcription coactivator activity  protein kinase activity  protein serine/threonine kinase activity  protein serine/threonine/tyrosine kinase activity  protein tyrosine kinase activity  protein binding  ATP binding  nucleus  nucleolus  protein phosphorylation  myoblast fusion  intracellular membrane-bounded organelle  positive regulation of transcription, DNA-dependent  
Pathways : BIOCARTASonic Hedgehog (Shh) Pathway [Genes]   
Other databases
Probes
Probes : ImagenesDYRK1B Related clones (RZPD - Berlin)
Litterature
PubMed23 Pubmed reference(s) in Entrez
PubGeneDYRK1B
iHOPDYRK1B

Bibliography

Mirk protein kinase is a mitogen-activated protein kinase substrate that mediates survival of colon cancer cells.
Lee K, Deng X, Friedman E.
Cancer Res. 2000 Jul 1;60(13):3631-7.
PMID 10910078
 
Mirk/dyrk1B is a Rho-induced kinase active in skeletal muscle differentiation.
Deng X, Ewton DZ, Pawlikowski B, Maimone M, Friedman E.
J Biol Chem. 2003 Oct 17;278(42):41347-54.
PMID 12902328
 
The kinase Mirk/Dyrk1B mediates cell survival in pancreatic ductal adenocarcinoma.
Deng X, Ewton DZ, Li S, Naqvi A, Mercer SE, Landas S, Friedman E.
Cancer Res. 2006 Apr 15;66(8):4149-58.
PMID 16618736
 
Mirk/Dyrk1b mediates cell survival in rhabdomyosarcomas.
Mercer SE, Ewton DZ, Shah S, Naqvi A, Friedman E.
Cancer Res. 2006 May 15;66(10):5143-50.
PMID 16707437
 
The survival kinase Mirk/Dyrk1B is a downstream effector of oncogenic K-ras in pancreatic cancer.
Jin K, Park S, Ewton DZ, Friedman E.
Cancer Res. 2007 Aug 1;67(15):7247-55.
PMID 17671193
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2008Eileen Friedman
Upstate Medical University, State University of New York, Syracuse, New York 13210, USA

Citation

This paper should be referenced as such :
Friedman E . DYRK1B (dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B). Atlas Genet Cytogenet Oncol Haematol. May 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/DYRK1BID43235ch19q13.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/44446/1/05-2008-DYRK1BID43235ch19q13.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 15:11:00 CEST 2012

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