Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EBAG9 (Estrogen receptor-binding fragment-associated antigen 9)

Identity

Other namesEB9
PDAF
RCAS1
Hugo EBAG9
Location 8q23.2

DNA/RNA

Description The EBAG9 gene contains 7 exons and 6 introns. It was predicted to span over approximately 24.6 kb of the genomic DNA with mRNA size approximately 1182 bp. The exon 3 was the smallest at 79 bp; the other exons ranged from 92-720 bp. The EBAG9 was isolated from MCF-7, human breast cancer cell library and it has been reported identical with RCAS1 (receptor-binding cancer antigen expressed on SiSo cells) gene from human uterine adenocarcinoma cell line.
Transcription The EBAG9 mRNA is up-regulated by estrogen in MCF-7 cells and its promoter responds to estrogen through the complete palindromic estrogen responsive element (ERE) that was located in the 5'-up stream region of the gene.
Pseudogene One pseudogene located in chromosome 10 associated with RCAS1/EBAG9.

Protein

Description The EBAG9/RCAS1 consists of 213 amino acids (aa) corresponding to a molecular weight of 24.4 kDa. The EBAG9/RCAS1 has an N-terminal trans-membrane segment (8-27 aa) and a coiled-coil structure in the C-terminal portion (179-206 aa), indicating that the EBAG9/RCAS1 is a type II membrane protein able to form oligomers through the coiled-coil structure, which is expressed on the surfaces of human cancer cells.
Expression The EBAG9/RCAS1 mRNA is expressed in ovary, testis, prostate, thymus, muscle, and heart. At the protein level the EBAG9/RCAS1 not detected in normal ovary tissues or any of the other above. Neither mRNA nor protein was detected in small intestine, colon, lymph node or peripheral blood lymphocytes.
Localisation Mainly in the golgi, membrane and cytoplasm of cancer tissues, but its expression is very low or hardly detected in normal tissues.
Function The biological functions of the EBAG9/RCAS1 secreted by non-cancerous tissues remain unknown.
In cancer cells, the EBAG9/RCAS1 is a ligand for a putative receptor present on various human cell lines and normal peripheral lymphocytes such as T-, B- and natural killer (NK)-cells. The expression of this receptor is enhanced by activation of these lymphocytes. The EBAG9/RCAS1 acts to inhibit the growth of receptor-binding cells and induced apoptotic cell death. Over-expression of the EBAG9/RCAS1 is known to inhibit the growth and induced apoptosis of immune cells. As the results, cancer cells might evade immune surveillance by expressing the EBAG9/RCAS1 and inducing the apoptosis of the EBAG9/RCAS1 receptor-positive immune cells.
Homology Mouse and human EBAG9/RCAS1 shows a high degree of homology at the amino acid level (98%). Mouse (Mus musculus) ebag9 gene spans about 30 kb in genomic DNA and consists of 7 exons. Dog (Canis familiaris) EBAG9/RCAS1 also shows highly homologues to human (96,2%) and to mouse (96,7%). For chimpanzee- (Pan troglodytes) 100%, rat- (Rattus norvegicus) 94% and chicken-ebag9 (Gallus gallus) 91%.

Mutations

Germinal Not known in Homo sapiens.
Somatic Not known in Homo sapiens.

Implicated in

Entity Immunity
Note During pregnancy, EBAG9/RCAS1 may play a role in the down-regulation of the maternal immune response and may participate in the initiation of the labor. In the healthy women, higher EBAG9/RCAS1 expression was observed in the periovulatory and the secretory menstrual cycle phases than in the proliferation phase. The changes in EBAG9/RCAS1 expression were combined with significant differences in the number of immune cells and their activity. It suggested that EBAG9/RCAS1 endometrial expression may favor the coexistence of active lymphocytes and endometrial cells.
Disease The elevated serum level of EBAG9/RCAS1 reported to be associated with a poor immunological prognosis in HIV-1-infected patients, and also associated with the apoptosis of CD4+ T cells in HIV infection. In addition, the induction and secretion of EBAG9/RCAS1 in HIV-Trans-acting transcriptional activator-stimulated CD4+ T cells and monocytes suggested that EBAG9/RCAS1 may involved in the CD4+ T cell apoptosis observed in HIV-1 infection along with FasL and TRAIL.
  
Entity Malignancy.
Disease The EBAG9/RCAS1 reported to be over-expressed in many human cancers. Among them: breast, female-genital, gastrointestinal, blood, lung, pancreas, liver, renal, billiary-tract, hepatic, prostate, thyroid, gall bladder, and brain cancer.
Prognosis The EBAG9/RCAS1 over-expression could be used as a predictor of poor prognosis in malignant diseases.
Oncogenesis The EBAG9/RCAS1 plays a role in the immune escape of cancer cells. The EBAG9/RCAS1 could help cancer cells to survive and avoid immunosurveillance. This gene over-expression might cause progression, invasion and metastasis. The EBAG9 acts as one of the estrogen responsive genes in estrogen receptor-positive tumors and mediate estrogen function. Overall, the EBAG9/RCAS1 has an etiological role in the development and progression of cancer cells.
  

External links

Nomenclature
HugoEBAG9
GDBEBAG9
Entrez_GeneEBAG9  9166  estrogen receptor binding site associated, antigen, 9
Cards
AtlasEBAG9ID40393ch8q23
GeneCardsEBAG9
EnsemblEBAG9 [Search_View]   ENSG00000147654 [Gene_View]
GenatlasEBAG9
GeneLynxEBAG9
eGenomeEBAG9
euGene9166
Genomic and cartography
GoldenPathEBAG9  -  8q23.2   chr8:110621105-110646565 +  8q23   [Description]    (hg18-Mar_2006)
EnsemblEBAG9 - 8q23 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneEBAG9
Gene and transcription
GenbankAB007619 [ ENTREZ ]
GenbankAF006265 [ ENTREZ ]
GenbankAK290651 [ ENTREZ ]
GenbankAK308950 [ ENTREZ ]
GenbankAL515533 [ ENTREZ ]
RefSeqNM_004215 [ SRS ]    NM_004215 [ ENTREZ ]
RefSeqNM_198120 [ SRS ]    NM_198120 [ ENTREZ ]
RefSeqAC_000051 [ SRS ]    AC_000051 [ ENTREZ ]
RefSeqAC_000140 [ SRS ]    AC_000140 [ ENTREZ ]
RefSeqNC_000008 [ SRS ]    NC_000008 [ ENTREZ ]
RefSeqNT_008046 [ SRS ]    NT_008046 [ ENTREZ ]
RefSeqNW_001839136 [ SRS ]    NW_001839136 [ ENTREZ ]
RefSeqNW_923984 [ SRS ]    NW_923984 [ ENTREZ ]
AceViewEBAG9 AceView - NCBI
UnigeneHs.409368 [ SRS ]    Hs.409368 [ NCBI ]     HS409368 [ spliceNest ]
Fast-db7832 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtO00559 [ SRS]    O00559 [ EXPASY ]     O00559 [ INTERPRO ]
InterproIPR017025 Cancer-assoc_antigen_RCAS1 [ SRS ]    IPR017025 Cancer-assoc_antigen_RCAS1 [ EBI ]
CluSTrO00559
BlocksO00559
PDBEBAG9 [ SRS ]    EBAG9 [ PdbSum ],   EBAG9 [ IMB ]   EBAG9 [ RSDB ]
HPRD05775
Protein Interaction databases
DIPO00559
IntActO00559
Polymorphism : SNP, mutations, diseases
OMIM605772    [ map ]   
GENECLINICS605772
SNPEBAG9 [dbSNP-NCBI]  
SNPNM_004215 [SNP-NCI]  
SNPNM_198120 [SNP-NCI]  
SNPEBAG9 [GeneSNPs - Utah]  EBAG9] [HGBASE - SRS]
HAPMAPEBAG9 [HAPMAP]  
COSMICEBAG9 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDEBAG9
General knowledge
Family BrowserEBAG9 [UCSC Family Browser]
SOURCENM_004215
SOURCENM_198120
SMDHs.409368
SAGEHs.409368
GOGolgi membrane [Amigo]  Golgi membrane
GOregulation of cell growth [Amigo]  regulation of cell growth
GOsoluble fraction [Amigo]  soluble fraction
GOGolgi apparatus [Amigo]  Golgi apparatus
GOapoptosis [Amigo]  apoptosis
GOmembrane [Amigo]  membrane
GOintegral to membrane [Amigo]  integral to membrane
GOapoptotic protease activator activity [Amigo]  apoptotic protease activator activity
PubGeneEBAG9
TreeFamEBAG9
CTD9166 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeEBAG9 Related clones (RZPD - Berlin)
PubMed
PubMed50 Pubmed reference(s) in LocusLink

Bibliography

Tumor-associated antigen 22-1-1 expression in the uterine cervical squamous neoplasias.
Sonoda K, Kaku T, Kamura T, Nakashima M, Watanabe T, Nakano H
Clinical cancer research : an official journal of the American Association for Cancer Research. 1998 ; 4 (6) : 1517-1520.
PMID 9626471
 
Isolation of estrogen-responsive genes with a CpG island library.
Watanabe T, Inoue S, Hiroi H, Orimo A, Kawashima H, Muramatsu M
Molecular and cellular biology. 1998 ; 18 (1) : 442-449.
PMID 9418891
 
Inhibition of cell growth and induction of apoptotic cell death by the human tumor-associated antigen RCAS1.
Nakashima M, Sonoda K, Watanabe T
Nature medicine. 1999 ; 5 (8) : 938-942.
PMID 10426319
 
Promoter analysis and chromosomal mapping of human EBAG9 gene.
Ikeda K, Sato M, Tsutsumi O, Tsuchiya F, Tsuneizumi M, Emi M, Imoto I, Inazawa J, Muramatsu M, Inoue S
Biochemical and biophysical research communications. 2000 ; 273 (2) : 654-660.
PMID 10873660
 
Molecular cloning and characterization of mouse EBAG9, homolog of a human cancer associated surface antigen: expression and regulation by estrogen.
Tsuchiya F, Ikeda K, Tsutsumi O, Hiroi H, Momoeda M, Taketani Y, Muramatsu M, Inoue S
Biochemical and biophysical research communications. 2001 ; 284 (1) : 2-10.
PMID 11374862
 
Overrepresentation of the EBAG9 gene at 8q23 associated with early-stage breast cancers.
Tsuneizumi M, Emi M, Nagai H, Harada H, Sakamoto G, Kasumi F, Inoue S, Kazui T, Nakamura Y
Clinical cancer research : an official journal of the American Association for Cancer Research. 2001 ; 7 (11) : 3526-3532.
PMID 11705872
 
Molecular cloning of canine RCAS1 cDNA.
Okamura Y, Ma Z, Khatlani TS, Okuda M, Une S, Nakaichi M, Taura Y
The Journal of veterinary medical science / the Japanese Society of Veterinary Science. 2003 ; 65 (8) : 913-915.
PMID 12951425
 
The Role of RCAS1 and oxytocinase in immune tolerance during pregnancy.
Wicherek L, Dutsch-Wicherek M, Mak P, Klimek M
Fetal diagnosis and therapy. 2005 ; 20 (5) : 420-425.
PMID 16113565
 
RCAS1 induced by HIV-Tat is involved in the apoptosis of HIV-1 infected and uninfected CD4+ T cells.
Minami R, Yamamoto M, Takahama S, Miyamura T, Watanabe H, Suematsu E
Cellular immunology. 2006 ; 243 (1) : 41-47.
PMID 17250817
 
Cycle dependent RCAS1 expression with respect to the immune cells presence and activity.
Wicherek L, Klimek M, Galazka K, Obrzut B
Neuro endocrinology letters. 2006 ; 27 (5) : 645-650.
PMID 17159823
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written04-2007Ahmad Faried, Leri S. Faried
Department of General Surgical Science (Surgery I), Graduate School of Medicine, Gunma University, Maebashi, Japan.

Citation

This paper should be referenced as such :
Faried A, Faried LS . EBAG9 (Estrogen receptor-binding fragment-associated antigen 9). Atlas Genet Cytogenet Oncol Haematol. April 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/EBAG9ID40393ch8q23.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 14 17:43:51 2008


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