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EBAG9 (Estrogen receptor-binding fragment-associated antigen 9)

Identity

Other namesEB9
PDAF
RCAS1
HGNC (Hugo) EBAG9
LocusID (NCBI) 9166
Location 8q23.2
Location_base_pair Starts at 110552310 and ends at 110577391 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

Description The EBAG9 gene contains 7 exons and 6 introns. It was predicted to span over approximately 24.6 kb of the genomic DNA with mRNA size approximately 1182 bp. The exon 3 was the smallest at 79 bp; the other exons ranged from 92-720 bp. The EBAG9 was isolated from MCF-7, human breast cancer cell library and it has been reported identical with RCAS1 (receptor-binding cancer antigen expressed on SiSo cells) gene from human uterine adenocarcinoma cell line.
Transcription The EBAG9 mRNA is up-regulated by estrogen in MCF-7 cells and its promoter responds to estrogen through the complete palindromic estrogen responsive element (ERE) that was located in the 5'-up stream region of the gene.
Pseudogene One pseudogene located in chromosome 10 associated with RCAS1/EBAG9.

Protein

Description The EBAG9/RCAS1 consists of 213 amino acids (aa) corresponding to a molecular weight of 24.4 kDa. The EBAG9/RCAS1 has an N-terminal trans-membrane segment (8-27 aa) and a coiled-coil structure in the C-terminal portion (179-206 aa), indicating that the EBAG9/RCAS1 is a type II membrane protein able to form oligomers through the coiled-coil structure, which is expressed on the surfaces of human cancer cells.
Expression The EBAG9/RCAS1 mRNA is expressed in ovary, testis, prostate, thymus, muscle, and heart. At the protein level the EBAG9/RCAS1 not detected in normal ovary tissues or any of the other above. Neither mRNA nor protein was detected in small intestine, colon, lymph node or peripheral blood lymphocytes.
Localisation Mainly in the golgi, membrane and cytoplasm of cancer tissues, but its expression is very low or hardly detected in normal tissues.
Function The biological functions of the EBAG9/RCAS1 secreted by non-cancerous tissues remain unknown.
In cancer cells, the EBAG9/RCAS1 is a ligand for a putative receptor present on various human cell lines and normal peripheral lymphocytes such as T-, B- and natural killer (NK)-cells. The expression of this receptor is enhanced by activation of these lymphocytes. The EBAG9/RCAS1 acts to inhibit the growth of receptor-binding cells and induced apoptotic cell death. Over-expression of the EBAG9/RCAS1 is known to inhibit the growth and induced apoptosis of immune cells. As the results, cancer cells might evade immune surveillance by expressing the EBAG9/RCAS1 and inducing the apoptosis of the EBAG9/RCAS1 receptor-positive immune cells.
Homology Mouse and human EBAG9/RCAS1 shows a high degree of homology at the amino acid level (98%). Mouse (Mus musculus) ebag9 gene spans about 30 kb in genomic DNA and consists of 7 exons. Dog (Canis familiaris) EBAG9/RCAS1 also shows highly homologues to human (96,2%) and to mouse (96,7%). For chimpanzee- (Pan troglodytes) 100%, rat- (Rattus norvegicus) 94% and chicken-ebag9 (Gallus gallus) 91%.

Mutations

Germinal Not known in Homo sapiens.
Somatic Not known in Homo sapiens.

Implicated in

Entity Immunity
Note During pregnancy, EBAG9/RCAS1 may play a role in the down-regulation of the maternal immune response and may participate in the initiation of the labor. In the healthy women, higher EBAG9/RCAS1 expression was observed in the periovulatory and the secretory menstrual cycle phases than in the proliferation phase. The changes in EBAG9/RCAS1 expression were combined with significant differences in the number of immune cells and their activity. It suggested that EBAG9/RCAS1 endometrial expression may favor the coexistence of active lymphocytes and endometrial cells.
Disease The elevated serum level of EBAG9/RCAS1 reported to be associated with a poor immunological prognosis in HIV-1-infected patients, and also associated with the apoptosis of CD4+ T cells in HIV infection. In addition, the induction and secretion of EBAG9/RCAS1 in HIV-Trans-acting transcriptional activator-stimulated CD4+ T cells and monocytes suggested that EBAG9/RCAS1 may involved in the CD4+ T cell apoptosis observed in HIV-1 infection along with FasL and TRAIL.
  
Entity Malignancy.
Disease The EBAG9/RCAS1 reported to be over-expressed in many human cancers. Among them: breast, female-genital, gastrointestinal, blood, lung, pancreas, liver, renal, billiary-tract, hepatic, prostate, thyroid, gall bladder, and brain cancer.
Prognosis The EBAG9/RCAS1 over-expression could be used as a predictor of poor prognosis in malignant diseases.
Oncogenesis The EBAG9/RCAS1 plays a role in the immune escape of cancer cells. The EBAG9/RCAS1 could help cancer cells to survive and avoid immunosurveillance. This gene over-expression might cause progression, invasion and metastasis. The EBAG9 acts as one of the estrogen responsive genes in estrogen receptor-positive tumors and mediate estrogen function. Overall, the EBAG9/RCAS1 has an etiological role in the development and progression of cancer cells.
  

External links

Nomenclature
HGNC (Hugo)EBAG9   3123
Entrez_Gene (NCBI)EBAG9  9166  estrogen receptor binding site associated, antigen, 9
Cards
AtlasEBAG9ID40393ch8q23
GeneCards (Weizmann)EBAG9
Ensembl (Hinxton)ENSG00000147654 [Gene_View]  chr8:110552310-110577391 [Contig_View]  EBAG9 [Vega]
AceView (NCBI)EBAG9
Genatlas (Paris)EBAG9
euGene (Indiana)9166
SOURCE (Stanford)NM_004215 NM_198120
Genomic and cartography
GoldenPath (UCSC)EBAG9  -  8q23.2   chr8:110552310-110577391 +  8q23   [Description]    (hg19-Feb_2009)
EnsemblEBAG9 - 8q23 [CytoView]
Mapping of homologs : NCBIEBAG9 [Mapview]
OMIM605772   
Gene and transcription
Genbank (Entrez)AB007619 AF006265 AK290651 AK308950 AL515533
RefSeq transcript (SRS)NM_004215 NM_198120
RefSeq transcript (Entrez)NM_004215 NM_198120
RefSeq genomic (SRS)AC_000140 NC_000008 NT_008046 NW_001839136
RefSeq genomic (Entrez)AC_000140 NC_000008 NT_008046 NW_001839136
Consensus coding sequences : CCDS (NCBI)EBAG9
Cluster EST : UnigeneHs.409368 [ SRS ] Hs.409368 [ NCBI ]
Alternative Splicing : Fast-db (Paris)7832
Alternative Splicing GalleryENSG00000147654
Gene ExpressionEBAG9 [ NCBI-GEO ]   EBAG9 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00559 (SRS) O00559 (Uniprot)
With graphics : InterProO00559
Splice isoforms : SwissVarO00559(Swissvar)
Domains : Interpro (SRS)Cancer-assoc_antigen_RCAS1   
Domains : Interpro (EBI)Cancer-assoc_antigen_RCAS1   
Related proteins : CluSTrO00559
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Blocks (Seattle)O00559
Human Protein AtlasENSG00000147654
HPRD05775
IPIIPI00299076   IPI00983699   IPI00983587   IPI00980693   IPI00984370   IPI00477518   
Protein Interaction databases
DIP (DOE-UCLA)O00559
IntAct (EBI)O00559
FunCoupENSG00000147654
REACTOMEEBAG9
BioGRIDEBAG9
InParanoidO00559
Interologous Interaction database O00559
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EBAG9
SNP (GeneSNP Utah)EBAG9
SNP : HGBaseEBAG9
Genetic variants : HAPMAPEBAG9
Somatic Mutations in Cancer : COSMICEBAG9 
CONAN: Copy Number AnalysisEBAG9 
Mutations and Diseases : HGMDEBAG9
OMIM605772   
GENETests605772   
Disease Genetic AssociationEBAG9
Huge Navigator EBAG9 [HugePedia]  EBAG9 [HugeCancerGEM]
Genomic VariantsEBAG9
snp3D : Map Gene to Disease9166
General knowledge
Homologs : HomoloGeneEBAG9
Homology/Alignments : Family Browser (UCSC)EBAG9
Phylogenetic Trees/Animal Genes : TreeFamEBAG9
Chemical/Protein Interactions : CTD9166
Chemical/Pharm GKB GenePA27581
Clinical trialEBAG9
Cancer Resource (Charite)ENSG00000147654
Ontology : AmiGOGolgi membrane  regulation of cell growth  soluble fraction  Golgi apparatus  plasma membrane  focal adhesion  apoptotic process  integral to membrane  apoptotic protease activator activity  
Ontology : EGO-EBIGolgi membrane  regulation of cell growth  soluble fraction  Golgi apparatus  plasma membrane  focal adhesion  apoptotic process  integral to membrane  apoptotic protease activator activity  
Other databases
Probes
Probes : ImagenesEBAG9 Related clones (RZPD - Berlin)
Litterature
PubMed70 Pubmed reference(s) in Entrez
PubGeneEBAG9
iHOPEBAG9

Bibliography

Tumor-associated antigen 22-1-1 expression in the uterine cervical squamous neoplasias.
Sonoda K, Kaku T, Kamura T, Nakashima M, Watanabe T, Nakano H
Clinical cancer research : an official journal of the American Association for Cancer Research. 1998 ; 4 (6) : 1517-1520.
PMID 9626471
 
Isolation of estrogen-responsive genes with a CpG island library.
Watanabe T, Inoue S, Hiroi H, Orimo A, Kawashima H, Muramatsu M
Molecular and cellular biology. 1998 ; 18 (1) : 442-449.
PMID 9418891
 
Inhibition of cell growth and induction of apoptotic cell death by the human tumor-associated antigen RCAS1.
Nakashima M, Sonoda K, Watanabe T
Nature medicine. 1999 ; 5 (8) : 938-942.
PMID 10426319
 
Promoter analysis and chromosomal mapping of human EBAG9 gene.
Ikeda K, Sato M, Tsutsumi O, Tsuchiya F, Tsuneizumi M, Emi M, Imoto I, Inazawa J, Muramatsu M, Inoue S
Biochemical and biophysical research communications. 2000 ; 273 (2) : 654-660.
PMID 10873660
 
Molecular cloning and characterization of mouse EBAG9, homolog of a human cancer associated surface antigen: expression and regulation by estrogen.
Tsuchiya F, Ikeda K, Tsutsumi O, Hiroi H, Momoeda M, Taketani Y, Muramatsu M, Inoue S
Biochemical and biophysical research communications. 2001 ; 284 (1) : 2-10.
PMID 11374862
 
Overrepresentation of the EBAG9 gene at 8q23 associated with early-stage breast cancers.
Tsuneizumi M, Emi M, Nagai H, Harada H, Sakamoto G, Kasumi F, Inoue S, Kazui T, Nakamura Y
Clinical cancer research : an official journal of the American Association for Cancer Research. 2001 ; 7 (11) : 3526-3532.
PMID 11705872
 
Molecular cloning of canine RCAS1 cDNA.
Okamura Y, Ma Z, Khatlani TS, Okuda M, Une S, Nakaichi M, Taura Y
The Journal of veterinary medical science / the Japanese Society of Veterinary Science. 2003 ; 65 (8) : 913-915.
PMID 12951425
 
The Role of RCAS1 and oxytocinase in immune tolerance during pregnancy.
Wicherek L, Dutsch-Wicherek M, Mak P, Klimek M
Fetal diagnosis and therapy. 2005 ; 20 (5) : 420-425.
PMID 16113565
 
RCAS1 induced by HIV-Tat is involved in the apoptosis of HIV-1 infected and uninfected CD4+ T cells.
Minami R, Yamamoto M, Takahama S, Miyamura T, Watanabe H, Suematsu E
Cellular immunology. 2006 ; 243 (1) : 41-47.
PMID 17250817
 
Cycle dependent RCAS1 expression with respect to the immune cells presence and activity.
Wicherek L, Klimek M, Galazka K, Obrzut B
Neuro endocrinology letters. 2006 ; 27 (5) : 645-650.
PMID 17159823
 
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Contributor(s)

Written04-2007Ahmad Faried, Leri S. Faried
Department of General Surgical Science (Surgery I), Graduate School of Medicine, Gunma University, Maebashi, Japan.

Citation

This paper should be referenced as such :
Faried A, Faried LS . EBAG9 (Estrogen receptor-binding fragment-associated antigen 9). Atlas Genet Cytogenet Oncol Haematol. April 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/EBAG9ID40393ch8q23.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/handle/2042/15941/04-2007-EBAG9ID40393ch8q23.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 15:01:49 CEST 2012

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