Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ADGRG1 (adhesion G protein-coupled receptor G1)

Identity

Alias_namesGPR56
G protein-coupled receptor 56
Alias_symbol (synonym)TM7LN4
TM7XN1
Other aliasBFPP
BPPR
HGNC (Hugo) ADGRG1
LocusID (NCBI) 9289
Atlas_Id 40743
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 57619998 and ends at 57665039 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADAMTS10 (19p13.2) / ADGRG1 (16q21)ADGRG1 (16q21) / ADAMTS10 (19p13.2)ADGRG1 (16q21) / ADGRG1 (16q21)
CDKN1B (12p13.1) / ADGRG1 (16q21)ELN (7q11.23) / ADGRG1 (16q21)PBX1 (1q23.3) / ADGRG1 (16q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADGRG1   4512
Cards
Entrez_Gene (NCBI)ADGRG1  9289  adhesion G protein-coupled receptor G1
AliasesBFPP; BPPR; GPR56; TM7LN4; 
TM7XN1
GeneCards (Weizmann)ADGRG1
Ensembl hg19 (Hinxton)ENSG00000205336 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205336 [Gene_View]  chr16:57619998-57665039 [Contig_View]  ADGRG1 [Vega]
ICGC DataPortalENSG00000205336
TCGA cBioPortalADGRG1
AceView (NCBI)ADGRG1
Genatlas (Paris)ADGRG1
WikiGenes9289
SOURCE (Princeton)ADGRG1
Genetics Home Reference (NIH)ADGRG1
Genomic and cartography
GoldenPath hg38 (UCSC)ADGRG1  -     chr16:57619998-57665039 +  16q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADGRG1  -     16q21   [Description]    (hg19-Feb_2009)
EnsemblADGRG1 - 16q21 [CytoView hg19]  ADGRG1 - 16q21 [CytoView hg38]
Mapping of homologs : NCBIADGRG1 [Mapview hg19]  ADGRG1 [Mapview hg38]
OMIM604110   606854   615752   
Gene and transcription
Genbank (Entrez)AF106858 AJ011001 AK074399 AK075270 AK075555
RefSeq transcript (Entrez)NM_001145770 NM_001145771 NM_001145772 NM_001145773 NM_001145774 NM_001290142 NM_001290143 NM_001290144 NM_005682 NM_201524 NM_201525
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADGRG1
Cluster EST : UnigeneHs.513633 [ NCBI ]
CGAP (NCI)Hs.513633
Alternative Splicing GalleryENSG00000205336
Gene ExpressionADGRG1 [ NCBI-GEO ]   ADGRG1 [ EBI - ARRAY_EXPRESS ]   ADGRG1 [ SEEK ]   ADGRG1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADGRG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9289
GTEX Portal (Tissue expression)ADGRG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y653   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y653  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y653
Splice isoforms : SwissVarQ9Y653
PhosPhoSitePlusQ9Y653
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F2_4 (PS50261)    GPS (PS50221)   
Domains : Interpro (EBI)GPCR_2-like    GPCR_2_secretin-like    GPR1/GPR3/GPR5    GPS   
Domain families : Pfam (Sanger)7tm_2 (PF00002)    GPS (PF01825)   
Domain families : Pfam (NCBI)pfam00002    pfam01825   
Domain families : Smart (EMBL)GPS (SM00303)  
Conserved Domain (NCBI)ADGRG1
DMDM Disease mutations9289
Blocks (Seattle)ADGRG1
SuperfamilyQ9Y653
Human Protein AtlasENSG00000205336
Peptide AtlasQ9Y653
HPRD06824
IPIIPI00412420   IPI00397949   IPI00442012   IPI01014131   IPI00925577   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y653
IntAct (EBI)Q9Y653
FunCoupENSG00000205336
BioGRIDADGRG1
STRING (EMBL)ADGRG1
ZODIACADGRG1
Ontologies - Pathways
QuickGOQ9Y653
Ontology : AmiGOangiogenesis  G-protein coupled receptor activity  collagen binding  intracellular  integral component of plasma membrane  cell adhesion  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  Rho protein signal transduction  cell-cell signaling  brain development  heparin binding  negative regulation of cell proliferation  vascular endothelial growth factor production  integral component of membrane  cell migration  cerebral cortex regionalization  cerebral cortex radial glia guided migration  layer formation in cerebral cortex  positive regulation of Rho protein signal transduction  membrane raft  positive regulation of cell adhesion  extracellular matrix binding  extracellular exosome  protein kinase C signaling  seminiferous tubule development  glial limiting end-foot  positive regulation of neural precursor cell proliferation  negative regulation of neuron migration  
Ontology : EGO-EBIangiogenesis  G-protein coupled receptor activity  collagen binding  intracellular  integral component of plasma membrane  cell adhesion  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  Rho protein signal transduction  cell-cell signaling  brain development  heparin binding  negative regulation of cell proliferation  vascular endothelial growth factor production  integral component of membrane  cell migration  cerebral cortex regionalization  cerebral cortex radial glia guided migration  layer formation in cerebral cortex  positive regulation of Rho protein signal transduction  membrane raft  positive regulation of cell adhesion  extracellular matrix binding  extracellular exosome  protein kinase C signaling  seminiferous tubule development  glial limiting end-foot  positive regulation of neural precursor cell proliferation  negative regulation of neuron migration  
NDEx NetworkADGRG1
Atlas of Cancer Signalling NetworkADGRG1
Wikipedia pathwaysADGRG1
Orthology - Evolution
OrthoDB9289
GeneTree (enSembl)ENSG00000205336
Phylogenetic Trees/Animal Genes : TreeFamADGRG1
HOVERGENQ9Y653
HOGENOMQ9Y653
Homologs : HomoloGeneADGRG1
Homology/Alignments : Family Browser (UCSC)ADGRG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADGRG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADGRG1
dbVarADGRG1
ClinVarADGRG1
1000_GenomesADGRG1 
Exome Variant ServerADGRG1
ExAC (Exome Aggregation Consortium)ADGRG1 (select the gene name)
Genetic variants : HAPMAP9289
Genomic Variants (DGV)ADGRG1 [DGVbeta]
DECIPHERADGRG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADGRG1 
Mutations
ICGC Data PortalADGRG1 
TCGA Data PortalADGRG1 
Broad Tumor PortalADGRG1
OASIS PortalADGRG1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADGRG1
BioMutasearch ADGRG1
DgiDB (Drug Gene Interaction Database)ADGRG1
DoCM (Curated mutations)ADGRG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADGRG1 (select a term)
intoGenADGRG1
Cancer3DADGRG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604110    606854    615752   
Orphanet13906    14781   
MedgenADGRG1
Genetic Testing Registry ADGRG1
NextProtQ9Y653 [Medical]
TSGene9289
GENETestsADGRG1
Target ValidationADGRG1
Huge Navigator ADGRG1 [HugePedia]
snp3D : Map Gene to Disease9289
BioCentury BCIQADGRG1
ClinGenADGRG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9289
Chemical/Pharm GKB GenePA28901
Clinical trialADGRG1
Miscellaneous
canSAR (ICR)ADGRG1 (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADGRG1
EVEXADGRG1
GoPubMedADGRG1
iHOPADGRG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:54:29 CEST 2017

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