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AGPAT2 (1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta))

Identity

Other names1-AGPAT2
BSCL
BSCL1
LPAAB
LPAAT-beta
HGNC (Hugo) AGPAT2
LocusID (NCBI) 10555
Location 9q34.3
Location_base_pair Starts at 139567595 and ends at 139581911 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AGPAT2   325
Entrez_Gene (NCBI)AGPAT2  10555  1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
Cards
GeneCards (Weizmann)AGPAT2
Ensembl (Hinxton)ENSG00000169692 [Gene_View]  chr9:139567595-139581911 [Contig_View]  AGPAT2 [Vega]
AceView (NCBI)AGPAT2
Genatlas (Paris)AGPAT2
SOURCE (Stanford)NM_001012727 NM_006412
Genomic and cartography
GoldenPath (UCSC)AGPAT2  -  9q34.3   chr9:139567595-139581911 -  9q34.3   [Description]    (hg19-Feb_2009)
EnsemblAGPAT2 - 9q34.3 [CytoView]
Mapping of homologs : NCBIAGPAT2 [Mapview]
OMIM603100   608594   
Gene and transcription
Genbank (Entrez)AF000237 AF011374 BC000026 BC004529 BC007269
RefSeq transcript (SRS)NM_001012727 NM_006412
RefSeq transcript (Entrez)NM_001012727 NM_006412
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NG_008090 NT_024000 NW_001839245 NW_004078061
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_008090 NT_024000 NW_001839245 NW_004078061
Consensus coding sequences : CCDS (NCBI)AGPAT2
Cluster EST : UnigeneHs.320151 [ SRS ] Hs.320151 [ NCBI ]
CGAP (NCI)Hs.320151
Alternative Splicing : Fast-db (Paris)GSHG0031282
Alternative Splicing GalleryENSG00000169692
Gene ExpressionAGPAT2 [ NCBI-GEO ]   AGPAT2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15120 (SRS) O15120 (Uniprot)
NextProtO15120
With graphics : InterProO15120
Splice isoforms : SwissVarO15120(Swissvar)
Domains : Interpro (SRS)Acyltransferase    AGP_acyltrans   
Domains : Interpro (EBI)Acyltransferase    AGP_acyltrans   
Related proteins : CluSTrO15120
Domain families : Pfam (SRS)Acyltransferase (PF01553)   
Domain families : Pfam (Sanger)Acyltransferase (PF01553)   
Domain families : Pfam (NCBI)pfam01553   
Domain families : Smart (EMBL)PlsC (SM00563)  
DMDM10555
Blocks (Seattle)O15120
Human Protein AtlasENSG00000169692
HPRD04373
IPIIPI00221372   IPI00464993   IPI00978162   
Protein Interaction databases
DIP (DOE-UCLA)O15120
IntAct (EBI)O15120
FunCoupENSG00000169692
REACTOMEAGPAT2
Protein Interaction Database10555
BioGRIDAGPAT2
InParanoidO15120
Interologous Interaction database O15120
IntegromeDBAGPAT2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)AGPAT2
SNP (GeneSNP Utah)AGPAT2
SNP : HGBaseAGPAT2
Genetic variants : HAPMAPAGPAT2
Somatic Mutations in Cancer : COSMICAGPAT2 
CONAN: Copy Number AnalysisAGPAT2 
Mutations and Diseases : HGMDAGPAT2
OMIM603100    608594   
GENETests603100    608594   
Disease Genetic AssociationAGPAT2
Huge Navigator AGPAT2 [HugePedia]  AGPAT2 [HugeCancerGEM]
Genomic VariantsAGPAT2  AGPAT2 [DGVbeta]
snp3D : Map Gene to Disease10555
General knowledge
Homologs : HomoloGeneAGPAT2
Homology/Alignments : Family Browser (UCSC)AGPAT2
Phylogenetic Trees/Animal Genes : TreeFamAGPAT2
Catalytic activity : Enzyme2.3.1.51 [ Enzyme-Expasy ]   2.3.1.51 [ Enzyme-SRS ]   2.3.1.51 [ IntEnz-EBI ]   2.3.1.51 [ BRENDA ]   2.3.1.51 [ KEGG ]   
Chemical/Protein Interactions : CTD10555
Chemical/Pharm GKB GenePA24622
Clinical trialAGPAT2
Cancer Resource (Charite)ENSG00000169692
Ontology : AmiGOpositive regulation of cytokine production  positive regulation of cytokine-mediated signaling pathway  1-acylglycerol-3-phosphate O-acyltransferase activity  1-acylglycerol-3-phosphate O-acyltransferase activity  endoplasmic reticulum  endoplasmic reticulum membrane  phospholipid metabolic process  phospholipid metabolic process  phosphatidic acid biosynthetic process  phosphatidic acid biosynthetic process  epidermis development  integral to membrane  CDP-diacylglycerol biosynthetic process  triglyceride biosynthetic process  cellular lipid metabolic process  small molecule metabolic process  glycerophospholipid biosynthetic process  
Ontology : EGO-EBIpositive regulation of cytokine production  positive regulation of cytokine-mediated signaling pathway  1-acylglycerol-3-phosphate O-acyltransferase activity  1-acylglycerol-3-phosphate O-acyltransferase activity  endoplasmic reticulum  endoplasmic reticulum membrane  phospholipid metabolic process  phospholipid metabolic process  phosphatidic acid biosynthetic process  phosphatidic acid biosynthetic process  epidermis development  integral to membrane  CDP-diacylglycerol biosynthetic process  triglyceride biosynthetic process  cellular lipid metabolic process  small molecule metabolic process  glycerophospholipid biosynthetic process  
Pathways : KEGGGlycerophospholipid metabolismGlycerolipid metabolism
Other databases
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
PubGeneAGPAT2
iHOPAGPAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:23:19 CEST 2013
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