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APBA2 (amyloid beta (A4) precursor protein-binding, family A, member 2)

Identity

Other namesD15S1518E
HsT16821
LIN-10
MGC:14091
MINT2
X11-BETA
X11L
HGNC (Hugo) APBA2
LocusID (NCBI) 321
Location 15q13.1
Location_base_pair Starts at 29213840 and ends at 29410516 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)APBA2   579
Entrez_Gene (NCBI)APBA2  321  amyloid beta (A4) precursor protein-binding, family A, member 2
Cards
GeneCards (Weizmann)APBA2
Ensembl (Hinxton)ENSG00000034053 [Gene_View]  chr15:29213840-29410516 [Contig_View]  APBA2 [Vega]
AceView (NCBI)APBA2
Genatlas (Paris)APBA2
SOURCE (Stanford)NM_001130414 NM_005503
Genomic and cartography
GoldenPath (UCSC)APBA2  -  15q13.1   chr15:29213840-29410516 +  15q13.1   [Description]    (hg19-Feb_2009)
EnsemblAPBA2 - 15q13.1 [CytoView]
Mapping of homologs : NCBIAPBA2 [Mapview]
OMIM602712   
Gene and transcription
Genbank (Entrez)AB014719 AB209281 AF029108 AF047348 AK124794
RefSeq transcript (SRS)NM_001130414 NM_005503
RefSeq transcript (Entrez)NM_001130414 NM_005503
RefSeq genomic (SRS)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838199 NW_004078084
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838199 NW_004078084
Consensus coding sequences : CCDS (NCBI)APBA2
Cluster EST : UnigeneHs.721380 [ SRS ] Hs.721380 [ NCBI ]
CGAP (NCI)Hs.721380
Alternative Splicing : Fast-db (Paris)GSHG0009714
Alternative Splicing GalleryENSG00000034053
Gene ExpressionAPBA2 [ NCBI-GEO ]   APBA2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99767 (SRS) Q99767 (Uniprot)
NextProtQ99767
With graphics : InterProQ99767
Splice isoforms : SwissVarQ99767(Swissvar)
Domaine pattern : Prosite (SRS)PDZ (PS50106)    PID (PS01179)   
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)    PID (PS01179)   
Domains : Interpro (SRS)PDZ    PH_like_dom    PTyr_interaction_dom   
Domains : Interpro (EBI)PDZ    PH_like_dom    PTyr_interaction_dom   
Related proteins : CluSTrQ99767
Domain families : Pfam (SRS)PDZ (PF00595)    PID (PF00640)   
Domain families : Pfam (Sanger)PDZ (PF00595)    PID (PF00640)   
Domain families : Pfam (NCBI)pfam00595    pfam00640   
Domain families : Smart (EMBL)PDZ (SM00228)  PTB (SM00462)  
DMDM321
Blocks (Seattle)Q99767
Human Protein AtlasENSG00000034053
HPRD04090
IPIIPI00017817   IPI00446113   IPI00847473   
Protein Interaction databases
DIP (DOE-UCLA)Q99767
IntAct (EBI)Q99767
FunCoupENSG00000034053
REACTOMEAPBA2
Protein Interaction Database321
BioGRIDAPBA2
InParanoidQ99767
Interologous Interaction database Q99767
IntegromeDBAPBA2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)APBA2
SNP (GeneSNP Utah)APBA2
SNP : HGBaseAPBA2
Genetic variants : HAPMAPAPBA2
Somatic Mutations in Cancer : COSMICAPBA2 
CONAN: Copy Number AnalysisAPBA2 
Mutations and Diseases : HGMDAPBA2
OMIM602712   
GENETests602712   
Disease Genetic AssociationAPBA2
Huge Navigator APBA2 [HugePedia]  APBA2 [HugeCancerGEM]
Genomic VariantsAPBA2  APBA2 [DGVbeta]
snp3D : Map Gene to Disease321
General knowledge
Homologs : HomoloGeneAPBA2
Homology/Alignments : Family Browser (UCSC)APBA2
Phylogenetic Trees/Animal Genes : TreeFamAPBA2
Chemical/Protein Interactions : CTD321
Chemical/Pharm GKB GenePA24870
Clinical trialAPBA2
Cancer Resource (Charite)ENSG00000034053
Ontology : AmiGObeta-amyloid binding  in utero embryonic development  protein binding  plasma membrane  synaptic transmission  nervous system development  locomotory behavior  regulation of gene expression  protein transport  multicellular organism growth  
Ontology : EGO-EBIbeta-amyloid binding  in utero embryonic development  protein binding  plasma membrane  synaptic transmission  nervous system development  locomotory behavior  regulation of gene expression  protein transport  multicellular organism growth  
Other databases
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
PubGeneAPBA2
iHOPAPBA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:46:47 CEST 2013
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