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ATG10 (autophagy related 10)

Identity

Alias_namesAPG10L
APG10 autophagy 10-like (S. cerevisiae)
ATG10 autophagy related 10 homolog (S. cerevisiae)
Alias_symbol (synonym)DKFZP586I0418
FLJ13954
Other aliasAPG10
pp12616
HGNC (Hugo) ATG10
LocusID (NCBI) 83734
Atlas_Id 53439
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 81972025 and ends at 82255396 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CREBBP (16p13.3) / ATG10 (5q14.1)CREBBP 16p13.3 / ATG10 5q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATG10   20315
Cards
Entrez_Gene (NCBI)ATG10  83734  autophagy related 10
AliasesAPG10; APG10L; pp12616
GeneCards (Weizmann)ATG10
Ensembl hg19 (Hinxton)ENSG00000152348 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152348 [Gene_View]  chr5:81972025-82255396 [Contig_View]  ATG10 [Vega]
ICGC DataPortalENSG00000152348
TCGA cBioPortalATG10
AceView (NCBI)ATG10
Genatlas (Paris)ATG10
WikiGenes83734
SOURCE (Princeton)ATG10
Genetics Home Reference (NIH)ATG10
Genomic and cartography
GoldenPath hg38 (UCSC)ATG10  -     chr5:81972025-82255396 +  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATG10  -     5q14.1   [Description]    (hg19-Feb_2009)
EnsemblATG10 - 5q14.1 [CytoView hg19]  ATG10 - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBIATG10 [Mapview hg19]  ATG10 [Mapview hg38]
OMIM610800   
Gene and transcription
Genbank (Entrez)AF318326 AI436652 AK024016 AK225969 AK315752
RefSeq transcript (Entrez)NM_001131028 NM_031482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATG10
Cluster EST : UnigeneHs.713698 [ NCBI ]
CGAP (NCI)Hs.713698
Alternative Splicing GalleryENSG00000152348
Gene ExpressionATG10 [ NCBI-GEO ]   ATG10 [ EBI - ARRAY_EXPRESS ]   ATG10 [ SEEK ]   ATG10 [ MEM ]
Gene Expression Viewer (FireBrowse)ATG10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83734
GTEX Portal (Tissue expression)ATG10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0Y0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0Y0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0Y0
Splice isoforms : SwissVarQ9H0Y0
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
PhosPhoSitePlusQ9H0Y0
Domains : Interpro (EBI)Autophagy-rel_prot_3   
Domain families : Pfam (Sanger)Autophagy_act_C (PF03987)   
Domain families : Pfam (NCBI)pfam03987   
Conserved Domain (NCBI)ATG10
DMDM Disease mutations83734
Blocks (Seattle)ATG10
SuperfamilyQ9H0Y0
Human Protein AtlasENSG00000152348
Peptide AtlasQ9H0Y0
HPRD16497
IPIIPI00017456   IPI00073313   IPI00968179   IPI00965558   IPI00967934   IPI00966345   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0Y0
IntAct (EBI)Q9H0Y0
FunCoupENSG00000152348
BioGRIDATG10
STRING (EMBL)ATG10
ZODIACATG10
Ontologies - Pathways
QuickGOQ9H0Y0
Ontology : AmiGOintracellular  cytosol  protein lipidation  autophagy  ER overload response  protein transport  macroautophagy  ligase activity  Atg12 transferase activity  positive regulation of protein modification process  protein modification by small protein conjugation  
Ontology : EGO-EBIintracellular  cytosol  protein lipidation  autophagy  ER overload response  protein transport  macroautophagy  ligase activity  Atg12 transferase activity  positive regulation of protein modification process  protein modification by small protein conjugation  
Pathways : KEGGRegulation of autophagy   
NDEx NetworkATG10
Atlas of Cancer Signalling NetworkATG10
Wikipedia pathwaysATG10
Orthology - Evolution
OrthoDB83734
GeneTree (enSembl)ENSG00000152348
Phylogenetic Trees/Animal Genes : TreeFamATG10
HOVERGENQ9H0Y0
HOGENOMQ9H0Y0
Homologs : HomoloGeneATG10
Homology/Alignments : Family Browser (UCSC)ATG10
Gene fusions - Rearrangements
Fusion : MitelmanCREBBP/ATG10 [16p13.3/5q14.1]  [t(5;16)(q14;p13)]  
Fusion: TCGACREBBP 16p13.3 ATG10 5q14.1 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATG10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATG10
dbVarATG10
ClinVarATG10
1000_GenomesATG10 
Exome Variant ServerATG10
ExAC (Exome Aggregation Consortium)ATG10 (select the gene name)
Genetic variants : HAPMAP83734
Genomic Variants (DGV)ATG10 [DGVbeta]
DECIPHERATG10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATG10 
Mutations
ICGC Data PortalATG10 
TCGA Data PortalATG10 
Broad Tumor PortalATG10
OASIS PortalATG10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATG10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATG10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATG10
DgiDB (Drug Gene Interaction Database)ATG10
DoCM (Curated mutations)ATG10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATG10 (select a term)
intoGenATG10
Cancer3DATG10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610800   
Orphanet
MedgenATG10
Genetic Testing Registry ATG10
NextProtQ9H0Y0 [Medical]
TSGene83734
GENETestsATG10
Huge Navigator ATG10 [HugePedia]
snp3D : Map Gene to Disease83734
BioCentury BCIQATG10
ClinGenATG10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83734
Chemical/Pharm GKB GenePA134872167
Clinical trialATG10
Miscellaneous
canSAR (ICR)ATG10 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATG10
EVEXATG10
GoPubMedATG10
iHOPATG10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:07:00 CEST 2017

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