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ATG5 (autophagy related 5)

Identity

Other namesAPG5
APG5-LIKE
APG5L
ASP
hAPG5
HGNC (Hugo) ATG5
LocusID (NCBI) 9474
Location 6q21
Location_base_pair Starts at 106632352 and ends at 106773695 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ATG5   589
Entrez_Gene (NCBI)ATG5  9474  autophagy related 5
Cards
GeneCards (Weizmann)ATG5
Ensembl (Hinxton)ENSG00000057663 [Gene_View]  chr6:106632352-106773695 [Contig_View]  ATG5 [Vega]
AceView (NCBI)ATG5
Genatlas (Paris)ATG5
SOURCE (Stanford)NM_004849
Genomic and cartography
GoldenPath (UCSC)ATG5  -  6q21   chr6:106632352-106773695 -  6q21   [Description]    (hg19-Feb_2009)
EnsemblATG5 - 6q21 [CytoView]
Mapping of homologs : NCBIATG5 [Mapview]
OMIM604261   
Gene and transcription
Genbank (Entrez)AF293841 AK001899 AK299577 AK315800 BC002699
RefSeq transcript (SRS)NM_004849
RefSeq transcript (Entrez)NM_004849
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838990 NW_004078028
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838990 NW_004078028
Consensus coding sequences : CCDS (NCBI)ATG5
Cluster EST : UnigeneHs.486063 [ SRS ] Hs.486063 [ NCBI ]
CGAP (NCI)Hs.486063
Alternative Splicing : Fast-db (Paris)GSHG0026809
Alternative Splicing GalleryENSG00000057663
Gene ExpressionATG5 [ NCBI-GEO ]   ATG5 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1Y0 (SRS) Q9H1Y0 (Uniprot)
NextProtQ9H1Y0
With graphics : InterProQ9H1Y0
Splice isoforms : SwissVarQ9H1Y0(Swissvar)
Domains : Interpro (SRS)Autophagy-rel_prot_5   
Domains : Interpro (EBI)Autophagy-rel_prot_5   
Related proteins : CluSTrQ9H1Y0
Domain families : Pfam (SRS)APG5 (PF04106)   
Domain families : Pfam (Sanger)APG5 (PF04106)   
Domain families : Pfam (NCBI)pfam04106   
DMDM9474
Blocks (Seattle)Q9H1Y0
Human Protein AtlasENSG00000057663
HPRD16051
IPIIPI00006800   IPI00220640   IPI00844068   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1Y0
IntAct (EBI)Q9H1Y0
FunCoupENSG00000057663
REACTOMEATG5
Protein Interaction Database9474
BioGRIDATG5
InParanoidQ9H1Y0
Interologous Interaction database Q9H1Y0
IntegromeDBATG5
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ATG5
SNP (GeneSNP Utah)ATG5
SNP : HGBaseATG5
Genetic variants : HAPMAPATG5
Somatic Mutations in Cancer : COSMICATG5 
CONAN: Copy Number AnalysisATG5 
Mutations and Diseases : HGMDATG5
OMIM604261   
GENETests604261   
Disease Genetic AssociationATG5
Huge Navigator ATG5 [HugePedia]  ATG5 [HugeCancerGEM]
Genomic VariantsATG5  ATG5 [DGVbeta]
snp3D : Map Gene to Disease9474
General knowledge
Homologs : HomoloGeneATG5
Homology/Alignments : Family Browser (UCSC)ATG5
Phylogenetic Trees/Animal Genes : TreeFamATG5
Chemical/Protein Interactions : CTD9474
Chemical/Pharm GKB GenePA24880
Clinical trialATG5
Cancer Resource (Charite)ENSG00000057663
Ontology : AmiGOautophagic vacuole assembly  blood vessel remodeling  protein binding  cytoplasm  autophagic vacuole  autophagy  apoptotic process  negative regulation of protein ubiquitination  negative regulation of type I interferon production  pre-autophagosomal structure membrane  vasodilation  response to drug  negative regulation of apoptotic process  protein complex  post-translational protein modification  innate immune response  otolith development  ventricular cardiac muscle cell development  heart contraction  
Ontology : EGO-EBIautophagic vacuole assembly  blood vessel remodeling  protein binding  cytoplasm  autophagic vacuole  autophagy  apoptotic process  negative regulation of protein ubiquitination  negative regulation of type I interferon production  pre-autophagosomal structure membrane  vasodilation  response to drug  negative regulation of apoptotic process  protein complex  post-translational protein modification  innate immune response  otolith development  ventricular cardiac muscle cell development  heart contraction  
Pathways : KEGGRegulation of autophagy
Other databases
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
PubGeneATG5
iHOPATG5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:42:16 CEST 2013
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