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BRI3 (brain protein I3)

Identity

Other aliasI3
HGNC (Hugo) BRI3
LocusID (NCBI) 25798
Atlas_Id 50886
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 98281667 and ends at 98291527 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BRI3 (7q21.3) / COL3A1 (2q32.2)BRI3 (7q21.3) / LOC100507053 (4q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BRI3   1109
Cards
Entrez_Gene (NCBI)BRI3  25798  brain protein I3
AliasesI3
GeneCards (Weizmann)BRI3
Ensembl hg19 (Hinxton)ENSG00000164713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164713 [Gene_View]  ENSG00000164713 [Sequence]  chr7:98281667-98291527 [Contig_View]  BRI3 [Vega]
ICGC DataPortalENSG00000164713
TCGA cBioPortalBRI3
AceView (NCBI)BRI3
Genatlas (Paris)BRI3
WikiGenes25798
SOURCE (Princeton)BRI3
Genetics Home Reference (NIH)BRI3
Genomic and cartography
GoldenPath hg38 (UCSC)BRI3  -     chr7:98281667-98291527 +  7q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BRI3  -     7q21.3   [Description]    (hg19-Feb_2009)
EnsemblBRI3 - 7q21.3 [CytoView hg19]  BRI3 - 7q21.3 [CytoView hg38]
Mapping of homologs : NCBIBRI3 [Mapview hg19]  BRI3 [Mapview hg38]
OMIM615628   
Gene and transcription
Genbank (Entrez)AB055977 AF041430 AF106966 BC018737 BC062370
RefSeq transcript (Entrez)NM_001159491 NM_015379
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BRI3
Cluster EST : UnigeneHs.567438 [ NCBI ]
CGAP (NCI)Hs.567438
Alternative Splicing GalleryENSG00000164713
Gene ExpressionBRI3 [ NCBI-GEO ]   BRI3 [ EBI - ARRAY_EXPRESS ]   BRI3 [ SEEK ]   BRI3 [ MEM ]
Gene Expression Viewer (FireBrowse)BRI3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25798
GTEX Portal (Tissue expression)BRI3
Human Protein AtlasENSG00000164713-BRI3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95415   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95415  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95415
Splice isoforms : SwissVarO95415
PhosPhoSitePlusO95415
Domains : Interpro (EBI)Brain_I3   
Domain families : Pfam (Sanger)DUF2367 (PF10164)   
Domain families : Pfam (NCBI)pfam10164   
Conserved Domain (NCBI)BRI3
DMDM Disease mutations25798
Blocks (Seattle)BRI3
SuperfamilyO95415
Human Protein Atlas [tissue]ENSG00000164713-BRI3 [tissue]
Peptide AtlasO95415
HPRD16562
IPIIPI00030675   IPI00929745   
Protein Interaction databases
DIP (DOE-UCLA)O95415
IntAct (EBI)O95415
FunCoupENSG00000164713
BioGRIDBRI3
STRING (EMBL)BRI3
ZODIACBRI3
Ontologies - Pathways
QuickGOO95415
Ontology : AmiGOplasma membrane  integral component of membrane  azurophil granule membrane  identical protein binding  neutrophil degranulation  
Ontology : EGO-EBIplasma membrane  integral component of membrane  azurophil granule membrane  identical protein binding  neutrophil degranulation  
NDEx NetworkBRI3
Atlas of Cancer Signalling NetworkBRI3
Wikipedia pathwaysBRI3
Orthology - Evolution
OrthoDB25798
GeneTree (enSembl)ENSG00000164713
Phylogenetic Trees/Animal Genes : TreeFamBRI3
HOVERGENO95415
HOGENOMO95415
Homologs : HomoloGeneBRI3
Homology/Alignments : Family Browser (UCSC)BRI3
Gene fusions - Rearrangements
Fusion : QuiverBRI3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRI3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRI3
dbVarBRI3
ClinVarBRI3
1000_GenomesBRI3 
Exome Variant ServerBRI3
ExAC (Exome Aggregation Consortium)ENSG00000164713
GNOMAD BrowserENSG00000164713
Varsome BrowserBRI3
Genetic variants : HAPMAP25798
Genomic Variants (DGV)BRI3 [DGVbeta]
DECIPHERBRI3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBRI3 
Mutations
ICGC Data PortalBRI3 
TCGA Data PortalBRI3 
Broad Tumor PortalBRI3
OASIS PortalBRI3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBRI3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBRI3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BRI3
DgiDB (Drug Gene Interaction Database)BRI3
DoCM (Curated mutations)BRI3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRI3 (select a term)
intoGenBRI3
Cancer3DBRI3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615628   
Orphanet
DisGeNETBRI3
MedgenBRI3
Genetic Testing Registry BRI3
NextProtO95415 [Medical]
TSGene25798
GENETestsBRI3
Target ValidationBRI3
Huge Navigator BRI3 [HugePedia]
snp3D : Map Gene to Disease25798
BioCentury BCIQBRI3
ClinGenBRI3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25798
Chemical/Pharm GKB GenePA25422
Clinical trialBRI3
Miscellaneous
canSAR (ICR)BRI3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRI3
EVEXBRI3
GoPubMedBRI3
iHOPBRI3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:11:54 CEST 2018

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