Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C1D (C1D nuclear receptor corepressor)

Identity

Other namesLRP1
SUN-CoR
SUNCOR
hC1D
HGNC (Hugo) C1D
LocusID (NCBI) 10438
Location 2p14
Location_base_pair Starts at 68269332 and ends at 68290159 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)C1D   29911
Entrez_Gene (NCBI)C1D  10438  C1D nuclear receptor corepressor
Cards
GeneCards (Weizmann)C1D
Ensembl (Hinxton) [Gene_View]  chr2:68269332-68290159 [Contig_View]  C1D [Vega]
AceView (NCBI)C1D
Genatlas (Paris)C1D
SOURCE (Stanford)NM_001190263 NM_001190265 NM_006333 NM_173177
Genomic and cartography
GoldenPath (UCSC)C1D  -  2p14   chr2:68269332-68290159 -  2p14   [Description]    (hg19-Feb_2009)
EnsemblC1D - 2p14 [CytoView]
Mapping of homologs : NCBIC1D [Mapview]
OMIM606997   
Gene and transcription
Genbank (Entrez)AI004680 AK290451 BC005235 BC009584 BC009589
RefSeq transcript (SRS)NM_001190263 NM_001190265 NM_006333 NM_173177
RefSeq transcript (Entrez)NM_001190263 NM_001190265 NM_006333 NM_173177
RefSeq genomic (SRS)AC_000134 NC_000002 NC_018913 NT_022184 NW_001838769 NW_004078005
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_022184 NW_001838769 NW_004078005
Consensus coding sequences : CCDS (NCBI)C1D
Cluster EST : UnigeneHs.697447 [ SRS ] Hs.697447 [ NCBI ]
CGAP (NCI)Hs.697447
Alternative Splicing : Fast-db (Paris)GSHG0017689
Gene ExpressionC1D [ NCBI-GEO ]   C1D [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13901 (SRS) Q13901 (Uniprot)
NextProtQ13901
With graphics : InterProQ13901
Splice isoforms : SwissVarQ13901(Swissvar)
Domains : Interpro (SRS)Exosome-assoc_fac/DNA_repair    Sas10/Utp3/C1D   
Domains : Interpro (EBI)Exosome-assoc_fac/DNA_repair    Sas10/Utp3/C1D   
Related proteins : CluSTrQ13901
Domain families : Pfam (SRS)Sas10_Utp3 (PF04000)   
Domain families : Pfam (Sanger)Sas10_Utp3 (PF04000)   
Domain families : Pfam (NCBI)pfam04000   
DMDM10438
Blocks (Seattle)Q13901
HPRD07382
IPIIPI00007322   IPI00893699   
Protein Interaction databases
DIP (DOE-UCLA)Q13901
IntAct (EBI)Q13901
REACTOMEC1D
Protein Interaction Database10438
BioGRIDC1D
InParanoidQ13901
Interologous Interaction database Q13901
IntegromeDBC1D
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)C1D
SNP (GeneSNP Utah)C1D
SNP : HGBaseC1D
Genetic variants : HAPMAPC1D
Somatic Mutations in Cancer : COSMICC1D 
CONAN: Copy Number AnalysisC1D 
Mutations and Diseases : HGMDC1D
OMIM606997   
GENETests606997   
Disease Genetic AssociationC1D
Huge Navigator C1D [HugePedia]  C1D [HugeCancerGEM]
Genomic VariantsC1D  C1D [DGVbeta]
ClinVarC1D
snp3D : Map Gene to Disease10438
General knowledge
Homologs : HomoloGeneC1D
Homology/Alignments : Family Browser (UCSC)C1D
Phylogenetic Trees/Animal Genes : TreeFamC1D
Chemical/Protein Interactions : CTD10438
Chemical/Pharm GKB GenePA164717007
Clinical trialC1D
Ontology : AmiGOnuclear exosome (RNase complex)  maturation of 5.8S rRNA  DNA binding  transcription corepressor activity  RNA binding  protein binding  nucleus  nucleolus  mitochondrion  transcription, DNA-dependent  apoptotic process  ligand-dependent nuclear receptor binding  transcriptional repressor complex  negative regulation of transcription, DNA-dependent  
Ontology : EGO-EBInuclear exosome (RNase complex)  maturation of 5.8S rRNA  DNA binding  transcription corepressor activity  RNA binding  protein binding  nucleus  nucleolus  mitochondrion  transcription, DNA-dependent  apoptotic process  ligand-dependent nuclear receptor binding  transcriptional repressor complex  negative regulation of transcription, DNA-dependent  
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
PubGeneC1D
iHOPC1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:31:23 CEST 2013
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