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C1D (C1D nuclear receptor corepressor)

Identity

Alias_namesC1D nuclear receptor co-repressor
Alias_symbol (synonym)SUNCOR
SUN-CoR
LRP1
Rrp47
Other aliashC1D
HGNC (Hugo) C1D
LocusID (NCBI) 10438
Atlas_Id 46324
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 68042200 and ends at 68063027 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MACF1 (1p34.3) / C1D (2p14)MCAM (11q23.3) / C1D (2p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1D   29911
Cards
Entrez_Gene (NCBI)C1D  10438  C1D nuclear receptor corepressor
AliasesLRP1; Rrp47; SUN-CoR; SUNCOR; 
hC1D
GeneCards (Weizmann)C1D
Ensembl hg19 (Hinxton)ENSG00000197223 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197223 [Gene_View]  chr2:68042200-68063027 [Contig_View]  C1D [Vega]
ICGC DataPortalENSG00000197223
TCGA cBioPortalC1D
AceView (NCBI)C1D
Genatlas (Paris)C1D
WikiGenes10438
SOURCE (Princeton)C1D
Genetics Home Reference (NIH)C1D
Genomic and cartography
GoldenPath hg38 (UCSC)C1D  -     chr2:68042200-68063027 -  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1D  -     2p14   [Description]    (hg19-Feb_2009)
EnsemblC1D - 2p14 [CytoView hg19]  C1D - 2p14 [CytoView hg38]
Mapping of homologs : NCBIC1D [Mapview hg19]  C1D [Mapview hg38]
OMIM606997   
Gene and transcription
Genbank (Entrez)AI004680 AK290451 BC005235 BC009584 BC009589
RefSeq transcript (Entrez)NM_001190263 NM_001190265 NM_006333 NM_173177
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1D
Cluster EST : UnigeneHs.697447 [ NCBI ]
CGAP (NCI)Hs.697447
Alternative Splicing GalleryENSG00000197223
Gene ExpressionC1D [ NCBI-GEO ]   C1D [ EBI - ARRAY_EXPRESS ]   C1D [ SEEK ]   C1D [ MEM ]
Gene Expression Viewer (FireBrowse)C1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10438
GTEX Portal (Tissue expression)C1D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13901   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13901  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13901
Splice isoforms : SwissVarQ13901
PhosPhoSitePlusQ13901
Domains : Interpro (EBI)Exosome-assoc_fac/DNA_repair    Sas10/Utp3/C1D   
Domain families : Pfam (Sanger)Sas10_Utp3 (PF04000)   
Domain families : Pfam (NCBI)pfam04000   
Conserved Domain (NCBI)C1D
DMDM Disease mutations10438
Blocks (Seattle)C1D
SuperfamilyQ13901
Human Protein AtlasENSG00000197223
Peptide AtlasQ13901
HPRD07382
IPIIPI00007322   IPI00893699   
Protein Interaction databases
DIP (DOE-UCLA)Q13901
IntAct (EBI)Q13901
FunCoupENSG00000197223
BioGRIDC1D
STRING (EMBL)C1D
ZODIACC1D
Ontologies - Pathways
QuickGOQ13901
Ontology : AmiGOnuclear exosome (RNase complex)  maturation of 5.8S rRNA  DNA binding  transcription corepressor activity  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  transcription, DNA-templated  rRNA processing  apoptotic process  ligand-dependent nuclear receptor binding  transcriptional repressor complex  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBInuclear exosome (RNase complex)  maturation of 5.8S rRNA  DNA binding  transcription corepressor activity  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  transcription, DNA-templated  rRNA processing  apoptotic process  ligand-dependent nuclear receptor binding  transcriptional repressor complex  negative regulation of transcription, DNA-templated  
Pathways : KEGGRNA degradation   
NDEx NetworkC1D
Atlas of Cancer Signalling NetworkC1D
Wikipedia pathwaysC1D
Orthology - Evolution
OrthoDB10438
GeneTree (enSembl)ENSG00000197223
Phylogenetic Trees/Animal Genes : TreeFamC1D
HOVERGENQ13901
HOGENOMQ13901
Homologs : HomoloGeneC1D
Homology/Alignments : Family Browser (UCSC)C1D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1D
dbVarC1D
ClinVarC1D
1000_GenomesC1D 
Exome Variant ServerC1D
ExAC (Exome Aggregation Consortium)C1D (select the gene name)
Genetic variants : HAPMAP10438
Genomic Variants (DGV)C1D [DGVbeta]
DECIPHERC1D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1D 
Mutations
ICGC Data PortalC1D 
TCGA Data PortalC1D 
Broad Tumor PortalC1D
OASIS PortalC1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1D
DgiDB (Drug Gene Interaction Database)C1D
DoCM (Curated mutations)C1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1D (select a term)
intoGenC1D
Cancer3DC1D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606997   
Orphanet
MedgenC1D
Genetic Testing Registry C1D
NextProtQ13901 [Medical]
TSGene10438
GENETestsC1D
Huge Navigator C1D [HugePedia]
snp3D : Map Gene to Disease10438
BioCentury BCIQC1D
ClinGenC1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10438
Chemical/Pharm GKB GenePA164717007
Clinical trialC1D
Miscellaneous
canSAR (ICR)C1D (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1D
EVEXC1D
GoPubMedC1D
iHOPC1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:08:16 CEST 2017

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