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CA9 (carbonic anhydrase 9)

Identity

Alias_namescarbonic anhydrase IX
Alias_symbol (synonym)MN
CAIX
Other alias
HGNC (Hugo) CA9
LocusID (NCBI) 768
Atlas_Id 898
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35673918 and ends at 35681157 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CA9   1383
Cards
Entrez_Gene (NCBI)CA9  768  carbonic anhydrase 9
AliasesCAIX; MN
GeneCards (Weizmann)CA9
Ensembl hg19 (Hinxton)ENSG00000107159 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107159 [Gene_View]  chr9:35673918-35681157 [Contig_View]  CA9 [Vega]
ICGC DataPortalENSG00000107159
TCGA cBioPortalCA9
AceView (NCBI)CA9
Genatlas (Paris)CA9
WikiGenes768
SOURCE (Princeton)CA9
Genetics Home Reference (NIH)CA9
Genomic and cartography
GoldenPath hg38 (UCSC)CA9  -     chr9:35673918-35681157 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CA9  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblCA9 - 9p13.3 [CytoView hg19]  CA9 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBICA9 [Mapview hg19]  CA9 [Mapview hg38]
OMIM603179   
Gene and transcription
Genbank (Entrez)AI023541 AJ010588 AL554705 BC014950 DQ892208
RefSeq transcript (Entrez)NM_001216
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CA9
Cluster EST : UnigeneHs.63287 [ NCBI ]
CGAP (NCI)Hs.63287
Alternative Splicing GalleryENSG00000107159
Gene ExpressionCA9 [ NCBI-GEO ]   CA9 [ EBI - ARRAY_EXPRESS ]   CA9 [ SEEK ]   CA9 [ MEM ]
Gene Expression Viewer (FireBrowse)CA9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)768
GTEX Portal (Tissue expression)CA9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16790   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16790  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16790
Splice isoforms : SwissVarQ16790
Catalytic activity : Enzyme4.2.1.1 [ Enzyme-Expasy ]   4.2.1.14.2.1.1 [ IntEnz-EBI ]   4.2.1.1 [ BRENDA ]   4.2.1.1 [ KEGG ]   
PhosPhoSitePlusQ16790
Domaine pattern : Prosite (Expaxy)ALPHA_CA_1 (PS00162)    ALPHA_CA_2 (PS51144)   
Domains : Interpro (EBI)CA9    Carbonic_anhydrase_a    Carbonic_anhydrase_a-class    Carbonic_anhydrase_a-class_CS   
Domain families : Pfam (Sanger)Carb_anhydrase (PF00194)   
Domain families : Pfam (NCBI)pfam00194   
Domain families : Smart (EMBL)Carb_anhydrase (SM01057)  
Conserved Domain (NCBI)CA9
DMDM Disease mutations768
Blocks (Seattle)CA9
PDB (SRS)2HKF    3IAI    5DVX    5FL4    5FL5    5FL6   
PDB (PDBSum)2HKF    3IAI    5DVX    5FL4    5FL5    5FL6   
PDB (IMB)2HKF    3IAI    5DVX    5FL4    5FL5    5FL6   
PDB (RSDB)2HKF    3IAI    5DVX    5FL4    5FL5    5FL6   
Structural Biology KnowledgeBase2HKF    3IAI    5DVX    5FL4    5FL5    5FL6   
SCOP (Structural Classification of Proteins)2HKF    3IAI    5DVX    5FL4    5FL5    5FL6   
CATH (Classification of proteins structures)2HKF    3IAI    5DVX    5FL4    5FL5    5FL6   
SuperfamilyQ16790
Human Protein AtlasENSG00000107159
Peptide AtlasQ16790
HPRD04417
IPIIPI00003966   IPI01015911   
Protein Interaction databases
DIP (DOE-UCLA)Q16790
IntAct (EBI)Q16790
FunCoupENSG00000107159
BioGRIDCA9
STRING (EMBL)CA9
ZODIACCA9
Ontologies - Pathways
QuickGOQ16790
Ontology : AmiGOmorphogenesis of an epithelium  carbonate dehydratase activity  nucleolus  plasma membrane  plasma membrane  one-carbon metabolic process  zinc ion binding  bicarbonate transport  integral component of membrane  basolateral plasma membrane  microvillus membrane  response to testosterone  response to drug  secretion  regulation of transcription from RNA polymerase II promoter in response to hypoxia  
Ontology : EGO-EBImorphogenesis of an epithelium  carbonate dehydratase activity  nucleolus  plasma membrane  plasma membrane  one-carbon metabolic process  zinc ion binding  bicarbonate transport  integral component of membrane  basolateral plasma membrane  microvillus membrane  response to testosterone  response to drug  secretion  regulation of transcription from RNA polymerase II promoter in response to hypoxia  
Pathways : KEGGNitrogen metabolism   
NDEx NetworkCA9
Atlas of Cancer Signalling NetworkCA9
Wikipedia pathwaysCA9
Orthology - Evolution
OrthoDB768
GeneTree (enSembl)ENSG00000107159
Phylogenetic Trees/Animal Genes : TreeFamCA9
HOVERGENQ16790
HOGENOMQ16790
Homologs : HomoloGeneCA9
Homology/Alignments : Family Browser (UCSC)CA9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCA9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CA9
dbVarCA9
ClinVarCA9
1000_GenomesCA9 
Exome Variant ServerCA9
ExAC (Exome Aggregation Consortium)CA9 (select the gene name)
Genetic variants : HAPMAP768
Genomic Variants (DGV)CA9 [DGVbeta]
DECIPHERCA9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCA9 
Mutations
ICGC Data PortalCA9 
TCGA Data PortalCA9 
Broad Tumor PortalCA9
OASIS PortalCA9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCA9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCA9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CA9
DgiDB (Drug Gene Interaction Database)CA9
DoCM (Curated mutations)CA9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CA9 (select a term)
intoGenCA9
Cancer3DCA9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603179   
Orphanet
MedgenCA9
Genetic Testing Registry CA9
NextProtQ16790 [Medical]
TSGene768
GENETestsCA9
Target ValidationCA9
Huge Navigator CA9 [HugePedia]
snp3D : Map Gene to Disease768
BioCentury BCIQCA9
ClinGenCA9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD768
Chemical/Pharm GKB GenePA25998
Clinical trialCA9
Miscellaneous
canSAR (ICR)CA9 (select the gene name)
Probes
Litterature
PubMed244 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCA9
EVEXCA9
GoPubMedCA9
iHOPCA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:37 CEST 2017

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