Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CCL2 (C-C motif chemokine ligand 2)

Identity

Alias_namesSCYA2
small inducible cytokine A2 (monocyte chemotactic protein 1, homologous to mouse Sig-je)
chemokine (C-C motif) ligand 2
Alias_symbol (synonym)MCP1
MCP-1
MCAF
SMC-CF
GDCF-2
HC11
MGC9434
Other aliasHSMCR30
HGNC (Hugo) CCL2
LocusID (NCBI) 6347
Atlas_Id 942
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 34255277 and ends at 34257201 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TAOK1 (17q11.2) / CCL2 (17q12)TAOK1 17q11.2 / CCL2 17q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t1717q11q12ID102440

External links

Nomenclature
HGNC (Hugo)CCL2   10618
Cards
Entrez_Gene (NCBI)CCL2  6347  C-C motif chemokine ligand 2
AliasesGDCF-2; HC11; HSMCR30; MCAF; 
MCP-1; MCP1; SCYA2; SMC-CF
GeneCards (Weizmann)CCL2
Ensembl hg19 (Hinxton)ENSG00000108691 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108691 [Gene_View]  ENSG00000108691 [Sequence]  chr17:34255277-34257201 [Contig_View]  CCL2 [Vega]
ICGC DataPortalENSG00000108691
TCGA cBioPortalCCL2
AceView (NCBI)CCL2
Genatlas (Paris)CCL2
WikiGenes6347
SOURCE (Princeton)CCL2
Genetics Home Reference (NIH)CCL2
Genomic and cartography
GoldenPath hg38 (UCSC)CCL2  -     chr17:34255277-34257201 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCL2  -     17q12   [Description]    (hg19-Feb_2009)
GoldenPathCCL2 - 17q12 [CytoView hg19]  CCL2 - 17q12 [CytoView hg38]
ImmunoBaseENSG00000108691
Mapping of homologs : NCBICCL2 [Mapview hg19]  CCL2 [Mapview hg38]
OMIM158105   182940   607948   609423   
Gene and transcription
Genbank (Entrez)AK311960 AV733621 BC009716 BG530064 BT007329
RefSeq transcript (Entrez)NM_002982
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCL2
Cluster EST : UnigeneHs.303649 [ NCBI ]
CGAP (NCI)Hs.303649
Alternative Splicing GalleryENSG00000108691
Gene ExpressionCCL2 [ NCBI-GEO ]   CCL2 [ EBI - ARRAY_EXPRESS ]   CCL2 [ SEEK ]   CCL2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6347
GTEX Portal (Tissue expression)CCL2
Human Protein AtlasENSG00000108691-CCL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13500   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP13500  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP13500
Splice isoforms : SwissVarP13500
PhosPhoSitePlusP13500
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CC (PS00472)   
Domains : Interpro (EBI)Chemokine_CC_CS    Chemokine_IL8-like_dom    Interleukin_8-like_sf   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
Conserved Domain (NCBI)CCL2
DMDM Disease mutations6347
Blocks (Seattle)CCL2
PDB (RSDB)1DOK    1DOL    1DOM    1DON    1MCA    1ML0    2BDN    2NZ1    3IFD    4DN4    4R8I    4ZK9   
PDB Europe1DOK    1DOL    1DOM    1DON    1MCA    1ML0    2BDN    2NZ1    3IFD    4DN4    4R8I    4ZK9   
PDB (PDBSum)1DOK    1DOL    1DOM    1DON    1MCA    1ML0    2BDN    2NZ1    3IFD    4DN4    4R8I    4ZK9   
PDB (IMB)1DOK    1DOL    1DOM    1DON    1MCA    1ML0    2BDN    2NZ1    3IFD    4DN4    4R8I    4ZK9   
Structural Biology KnowledgeBase1DOK    1DOL    1DOM    1DON    1MCA    1ML0    2BDN    2NZ1    3IFD    4DN4    4R8I    4ZK9   
SCOP (Structural Classification of Proteins)1DOK    1DOL    1DOM    1DON    1MCA    1ML0    2BDN    2NZ1    3IFD    4DN4    4R8I    4ZK9   
CATH (Classification of proteins structures)1DOK    1DOL    1DOM    1DON    1MCA    1ML0    2BDN    2NZ1    3IFD    4DN4    4R8I    4ZK9   
SuperfamilyP13500
Human Protein Atlas [tissue]ENSG00000108691-CCL2 [tissue]
Peptide AtlasP13500
HPRD01149
IPIIPI00009308   
Protein Interaction databases
DIP (DOE-UCLA)P13500
IntAct (EBI)P13500
FunCoupENSG00000108691
BioGRIDCCL2
STRING (EMBL)CCL2
ZODIACCCL2
Ontologies - Pathways
QuickGOP13500
Ontology : AmiGOMAPK cascade  angiogenesis  monocyte chemotaxis  monocyte chemotaxis  protein kinase activity  signaling receptor binding  protein binding  extracellular region  extracellular region  extracellular space  cell  protein phosphorylation  chemotaxis  inflammatory response  inflammatory response  humoral immune response  cytoskeleton organization  cell adhesion  signal transduction  cell surface receptor signaling pathway  G protein-coupled receptor signaling pathway  G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  JAK-STAT cascade  chemokine activity  regulation of cell shape  response to bacterium  animal organ morphogenesis  viral genome replication  cytokine-mediated signaling pathway  cytokine-mediated signaling pathway  sensory perception of pain  cellular homeostasis  neutrophil chemotaxis  lipopolysaccharide-mediated signaling pathway  CCR2 chemokine receptor binding  CCR2 chemokine receptor binding  negative regulation of glial cell apoptotic process  helper T cell extravasation  PERK-mediated unfolded protein response  protein kinase B signaling  negative regulation of neuron apoptotic process  positive regulation of GTPase activity  astrocyte cell migration  cellular response to fibroblast growth factor stimulus  CCR chemokine receptor binding  eosinophil chemotaxis  macrophage chemotaxis  lymphocyte chemotaxis  positive regulation of T cell activation  positive regulation of nitric-oxide synthase biosynthetic process  positive regulation of synaptic transmission, glutamatergic  chemokine-mediated signaling pathway  positive regulation of ERK1 and ERK2 cascade  cellular response to lipopolysaccharide  cellular response to interferon-gamma  cellular response to interferon-gamma  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to interleukin-1  cellular response to interleukin-1  cellular response to tumor necrosis factor  cellular response to tumor necrosis factor  cellular response to tumor necrosis factor  cellular response to organic cyclic compound  positive regulation of calcium ion import  positive regulation of NMDA glutamate receptor activity  negative regulation of vascular endothelial cell proliferation  negative regulation of G1/S transition of mitotic cell cycle  positive regulation of endothelial cell apoptotic process  positive regulation of apoptotic cell clearance  negative regulation of natural killer cell chemotaxis  
Ontology : EGO-EBIMAPK cascade  angiogenesis  monocyte chemotaxis  monocyte chemotaxis  protein kinase activity  signaling receptor binding  protein binding  extracellular region  extracellular region  extracellular space  cell  protein phosphorylation  chemotaxis  inflammatory response  inflammatory response  humoral immune response  cytoskeleton organization  cell adhesion  signal transduction  cell surface receptor signaling pathway  G protein-coupled receptor signaling pathway  G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  JAK-STAT cascade  chemokine activity  regulation of cell shape  response to bacterium  animal organ morphogenesis  viral genome replication  cytokine-mediated signaling pathway  cytokine-mediated signaling pathway  sensory perception of pain  cellular homeostasis  neutrophil chemotaxis  lipopolysaccharide-mediated signaling pathway  CCR2 chemokine receptor binding  CCR2 chemokine receptor binding  negative regulation of glial cell apoptotic process  helper T cell extravasation  PERK-mediated unfolded protein response  protein kinase B signaling  negative regulation of neuron apoptotic process  positive regulation of GTPase activity  astrocyte cell migration  cellular response to fibroblast growth factor stimulus  CCR chemokine receptor binding  eosinophil chemotaxis  macrophage chemotaxis  lymphocyte chemotaxis  positive regulation of T cell activation  positive regulation of nitric-oxide synthase biosynthetic process  positive regulation of synaptic transmission, glutamatergic  chemokine-mediated signaling pathway  positive regulation of ERK1 and ERK2 cascade  cellular response to lipopolysaccharide  cellular response to interferon-gamma  cellular response to interferon-gamma  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to interleukin-1  cellular response to interleukin-1  cellular response to tumor necrosis factor  cellular response to tumor necrosis factor  cellular response to tumor necrosis factor  cellular response to organic cyclic compound  positive regulation of calcium ion import  positive regulation of NMDA glutamate receptor activity  negative regulation of vascular endothelial cell proliferation  negative regulation of G1/S transition of mitotic cell cycle  positive regulation of endothelial cell apoptotic process  positive regulation of apoptotic cell clearance  negative regulation of natural killer cell chemotaxis  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway    NOD-like receptor signaling pathway    TNF signaling pathway    Chagas disease (American trypanosomiasis)    Malaria    Influenza A    Herpes simplex infection    Rheumatoid arthritis   
NDEx NetworkCCL2
Atlas of Cancer Signalling NetworkCCL2
Wikipedia pathwaysCCL2
Orthology - Evolution
OrthoDB6347
GeneTree (enSembl)ENSG00000108691
Phylogenetic Trees/Animal Genes : TreeFamCCL2
HOGENOMP13500
Homologs : HomoloGeneCCL2
Homology/Alignments : Family Browser (UCSC)CCL2
Gene fusions - Rearrangements
Fusion : MitelmanTAOK1/CCL2 [17q11.2/17q12]  [t(17;17)(q11;q12)]  
Fusion PortalTAOK1 17q11.2 CCL2 17q12 BRCA
Fusion : QuiverCCL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCL2
dbVarCCL2
ClinVarCCL2
1000_GenomesCCL2 
Exome Variant ServerCCL2
ExAC (Exome Aggregation Consortium)ENSG00000108691
GNOMAD BrowserENSG00000108691
Varsome BrowserCCL2
Genetic variants : HAPMAP6347
Genomic Variants (DGV)CCL2 [DGVbeta]
DECIPHERCCL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCL2 
Mutations
ICGC Data PortalCCL2 
TCGA Data PortalCCL2 
Broad Tumor PortalCCL2
OASIS PortalCCL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCL2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCL2
Mutations and Diseases : HGMDCCL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)TBsLVD Tuberculosis susceptibility Locus Variation Database
BioMutasearch CCL2
DgiDB (Drug Gene Interaction Database)CCL2
DoCM (Curated mutations)CCL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCL2 (select a term)
intoGenCCL2
Cancer3DCCL2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM158105    182940    607948    609423   
Orphanet
DisGeNETCCL2
MedgenCCL2
Genetic Testing Registry CCL2
NextProtP13500 [Medical]
TSGene6347
GENETestsCCL2
Target ValidationCCL2
Huge Navigator CCL2 [HugePedia]
snp3D : Map Gene to Disease6347
BioCentury BCIQCCL2
ClinGenCCL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6347
Chemical/Pharm GKB GenePA130413151
Clinical trialCCL2
Miscellaneous
canSAR (ICR)CCL2 (select the gene name)
DataMed IndexCCL2
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCL2
EVEXCCL2
GoPubMedCCL2
iHOPCCL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jan 27 14:34:46 CET 2020
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