Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CCL2 (chemokine (C-C motif) ligand 2)

Identity

Other namesGDCF-2
HC11
HSMCR30
MCAF
MCP-1
MCP1
SCYA2
SMC-CF
HGNC (Hugo) CCL2
LocusID (NCBI) 6347
Location 17q12
Location_base_pair Starts at 32582296 and ends at 32584220 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCL2   10618
Cards
Entrez_Gene (NCBI)CCL2  6347  chemokine (C-C motif) ligand 2
GeneCards (Weizmann)CCL2
Ensembl hg19 (Hinxton)ENSG00000108691 [Gene_View]  chr17:32582296-32584220 [Contig_View]  CCL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000108691 [Gene_View]  chr17:32582296-32584220 [Contig_View]  CCL2 [Vega]
ICGC DataPortalENSG00000108691
cBioPortalCCL2
AceView (NCBI)CCL2
Genatlas (Paris)CCL2
WikiGenes6347
SOURCE (Princeton)CCL2
Genomic and cartography
GoldenPath hg19 (UCSC)CCL2  -     chr17:32582296-32584220 +  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCL2  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblCCL2 - 17q12 [CytoView hg19]  CCL2 - 17q12 [CytoView hg38]
Mapping of homologs : NCBICCL2 [Mapview hg19]  CCL2 [Mapview hg38]
OMIM158105   182940   607948   609423   
Gene and transcription
Genbank (Entrez)AK311960 AV733621 BC009716 BG530064 BT007329
RefSeq transcript (Entrez)NM_002982
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_012123 NT_010783 NW_001838432 NW_004929407
Consensus coding sequences : CCDS (NCBI)CCL2
Cluster EST : UnigeneHs.303649 [ NCBI ]
CGAP (NCI)Hs.303649
Alternative Splicing : Fast-db (Paris)GSHG0012398
Alternative Splicing GalleryENSG00000108691
Gene ExpressionCCL2 [ NCBI-GEO ]     CCL2 [ SEEK ]   CCL2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13500 (Uniprot)
NextProtP13500  [Medical]
With graphics : InterProP13500
Splice isoforms : SwissVarP13500 (Swissvar)
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CC (PS00472)   
Domains : Interpro (EBI)Chemokine_CC_CS    Chemokine_IL8-like_dom   
Related proteins : CluSTrP13500
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
DMDM Disease mutations6347
Blocks (Seattle)P13500
PDB (SRS)1DOK    1DOL    1DOM    1DON    1MCA    1ML0    2BDN    2NZ1    3IFD    4DN4   
PDB (PDBSum)1DOK    1DOL    1DOM    1DON    1MCA    1ML0    2BDN    2NZ1    3IFD    4DN4   
PDB (IMB)1DOK    1DOL    1DOM    1DON    1MCA    1ML0    2BDN    2NZ1    3IFD    4DN4   
PDB (RSDB)1DOK    1DOL    1DOM    1DON    1MCA    1ML0    2BDN    2NZ1    3IFD    4DN4   
Human Protein AtlasENSG00000108691
Peptide AtlasP13500
HPRD01149
IPIIPI00009308   
Protein Interaction databases
DIP (DOE-UCLA)P13500
IntAct (EBI)P13500
FunCoupENSG00000108691
BioGRIDCCL2
IntegromeDBCCL2
STRING (EMBL)CCL2
Ontologies - Pathways
QuickGOP13500
Ontology : AmiGOMAPK cascade  angiogenesis  response to hypoxia  positive regulation of endothelial cell proliferation  monocyte chemotaxis  protein kinase activity  receptor binding  extracellular region  extracellular region  extracellular space  cytoplasm  protein phosphorylation  cellular calcium ion homeostasis  chemotaxis  inflammatory response  humoral immune response  activation of signaling protein activity involved in unfolded protein response  cytoskeleton organization  cell adhesion  signal transduction  cell surface receptor signaling pathway  transforming growth factor beta receptor signaling pathway  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  JAK-STAT cascade  aging  chemokine activity  heparin binding  regulation of cell shape  response to heat  response to mechanical stimulus  response to bacterium  organ morphogenesis  response to gamma radiation  regulation of vascular endothelial growth factor production  positive regulation of macrophage chemotaxis  response to activity  negative regulation of angiogenesis  viral genome replication  cytokine-mediated signaling pathway  cellular homeostasis  neutrophil chemotaxis  endoplasmic reticulum unfolded protein response  organ regeneration  lipopolysaccharide-mediated signaling pathway  CCR2 chemokine receptor binding  CCR2 chemokine receptor binding  response to progesterone  response to vitamin B3  negative regulation of glial cell apoptotic process  helper T cell extravasation  response to drug  neuronal cell body  response to amino acid  protein kinase B signaling  negative regulation of neuron apoptotic process  astrocyte cell migration  cellular protein metabolic process  cellular response to fibroblast growth factor stimulus  response to ethanol  response to antibiotic  vascular endothelial growth factor receptor signaling pathway  macrophage chemotaxis  lymphocyte chemotaxis  positive regulation of synaptic transmission  positive regulation of T cell activation  response to glucocorticoid  positive regulation of nitric-oxide synthase biosynthetic process  maternal process involved in parturition  chemokine-mediated signaling pathway  cellular response to lipopolysaccharide  cellular response to interferon-gamma  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to interleukin-1  cellular response to tumor necrosis factor  cellular response to tumor necrosis factor  cellular response to organic cyclic compound  positive regulation of immune complex clearance by monocytes and macrophages  positive regulation of calcium ion import  positive regulation of apoptotic cell clearance  negative regulation of natural killer cell chemotaxis  
Ontology : EGO-EBIMAPK cascade  angiogenesis  response to hypoxia  positive regulation of endothelial cell proliferation  monocyte chemotaxis  protein kinase activity  receptor binding  extracellular region  extracellular region  extracellular space  cytoplasm  protein phosphorylation  cellular calcium ion homeostasis  chemotaxis  inflammatory response  humoral immune response  activation of signaling protein activity involved in unfolded protein response  cytoskeleton organization  cell adhesion  signal transduction  cell surface receptor signaling pathway  transforming growth factor beta receptor signaling pathway  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  JAK-STAT cascade  aging  chemokine activity  heparin binding  regulation of cell shape  response to heat  response to mechanical stimulus  response to bacterium  organ morphogenesis  response to gamma radiation  regulation of vascular endothelial growth factor production  positive regulation of macrophage chemotaxis  response to activity  negative regulation of angiogenesis  viral genome replication  cytokine-mediated signaling pathway  cellular homeostasis  neutrophil chemotaxis  endoplasmic reticulum unfolded protein response  organ regeneration  lipopolysaccharide-mediated signaling pathway  CCR2 chemokine receptor binding  CCR2 chemokine receptor binding  response to progesterone  response to vitamin B3  negative regulation of glial cell apoptotic process  helper T cell extravasation  response to drug  neuronal cell body  response to amino acid  protein kinase B signaling  negative regulation of neuron apoptotic process  astrocyte cell migration  cellular protein metabolic process  cellular response to fibroblast growth factor stimulus  response to ethanol  response to antibiotic  vascular endothelial growth factor receptor signaling pathway  macrophage chemotaxis  lymphocyte chemotaxis  positive regulation of synaptic transmission  positive regulation of T cell activation  response to glucocorticoid  positive regulation of nitric-oxide synthase biosynthetic process  maternal process involved in parturition  chemokine-mediated signaling pathway  cellular response to lipopolysaccharide  cellular response to interferon-gamma  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to interleukin-1  cellular response to tumor necrosis factor  cellular response to tumor necrosis factor  cellular response to organic cyclic compound  positive regulation of immune complex clearance by monocytes and macrophages  positive regulation of calcium ion import  positive regulation of apoptotic cell clearance  negative regulation of natural killer cell chemotaxis  
Pathways : BIOCARTAPertussis toxin-insensitive CCR5 Signaling in Macrophage [Genes]    Msp/Ron Receptor Signaling Pathway [Genes]    Low-density lipoprotein (LDL) pathway during atherogenesis [Genes]   
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway    NOD-like receptor signaling pathway    TNF signaling pathway    Chagas disease (American trypanosomiasis)    Malaria    Influenza A    Herpes simplex infection    Rheumatoid arthritis   
Protein Interaction DatabaseCCL2
DoCM (Curated mutations)CCL2
Wikipedia pathwaysCCL2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCCL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCL2
dbVarCCL2
ClinVarCCL2
1000_GenomesCCL2 
Exome Variant ServerCCL2
SNP (GeneSNP Utah)CCL2
SNP : HGBaseCCL2
Genetic variants : HAPMAPCCL2
Genomic VariantsCCL2  CCL2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000108691 
Somatic Mutations in Cancer : COSMICCCL2 
CONAN: Copy Number AnalysisCCL2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)TBsLVD Tuberculosis susceptibility Locus Variation Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:32582296-32584220
Mutations and Diseases : HGMDCCL2
OMIM158105    182940    607948    609423   
MedgenCCL2
NextProtP13500 [Medical]
GENETestsCCL2
Disease Genetic AssociationCCL2
Huge Navigator CCL2 [HugePedia]  CCL2 [HugeCancerGEM]
snp3D : Map Gene to Disease6347
DGIdb (Drug Gene Interaction db)CCL2
General knowledge
Homologs : HomoloGeneCCL2
Homology/Alignments : Family Browser (UCSC)CCL2
Phylogenetic Trees/Animal Genes : TreeFamCCL2
Chemical/Protein Interactions : CTD6347
Chemical/Pharm GKB GenePA130413151
Clinical trialCCL2
Cancer Resource (Charite)ENSG00000108691
Other databases
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
CoreMineCCL2
GoPubMedCCL2
iHOPCCL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 20:41:55 CET 2014
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