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CCR10 (C-C motif chemokine receptor 10)

Identity

Alias_namesGPR2
G protein-coupled receptor 2
chemokine (C-C motif) receptor 10
Other alias
HGNC (Hugo) CCR10
LocusID (NCBI) 2826
Atlas_Id 46203
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 42679402 and ends at 42681827 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCR10   4474
Cards
Entrez_Gene (NCBI)CCR10  2826  C-C motif chemokine receptor 10
AliasesGPR2
GeneCards (Weizmann)CCR10
Ensembl hg19 (Hinxton)ENSG00000184451 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184451 [Gene_View]  chr17:42679402-42681827 [Contig_View]  CCR10 [Vega]
ICGC DataPortalENSG00000184451
TCGA cBioPortalCCR10
AceView (NCBI)CCR10
Genatlas (Paris)CCR10
WikiGenes2826
SOURCE (Princeton)CCR10
Genetics Home Reference (NIH)CCR10
Genomic and cartography
GoldenPath hg38 (UCSC)CCR10  -     chr17:42679402-42681827 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCR10  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblCCR10 - 17q21.2 [CytoView hg19]  CCR10 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBICCR10 [Mapview hg19]  CCR10 [Mapview hg38]
OMIM600240   
Gene and transcription
Genbank (Entrez)AF208237 AF215981 AY429103 BC098132 BC098157
RefSeq transcript (Entrez)NM_016602
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCR10
Cluster EST : UnigeneHs.744542 [ NCBI ]
CGAP (NCI)Hs.744542
Alternative Splicing GalleryENSG00000184451
Gene ExpressionCCR10 [ NCBI-GEO ]   CCR10 [ EBI - ARRAY_EXPRESS ]   CCR10 [ SEEK ]   CCR10 [ MEM ]
Gene Expression Viewer (FireBrowse)CCR10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2826
GTEX Portal (Tissue expression)CCR10
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46092   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46092  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46092
Splice isoforms : SwissVarP46092
PhosPhoSitePlusP46092
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)Chemokine_CCR10    Chemokine_rcpt    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)CCR10
DMDM Disease mutations2826
Blocks (Seattle)CCR10
SuperfamilyP46092
Human Protein AtlasENSG00000184451
Peptide AtlasP46092
HPRD02586
IPIIPI00004346   
Protein Interaction databases
DIP (DOE-UCLA)P46092
IntAct (EBI)P46092
FunCoupENSG00000184451
BioGRIDCCR10
STRING (EMBL)CCR10
ZODIACCCR10
Ontologies - Pathways
QuickGOP46092
Ontology : AmiGOG-protein coupled receptor activity  protein binding  plasma membrane  integral component of plasma membrane  chemotaxis  immune response  G-protein coupled receptor signaling pathway  positive regulation of cytosolic calcium ion concentration  cell surface  C-C chemokine receptor activity  chemokine-mediated signaling pathway  
Ontology : EGO-EBIG-protein coupled receptor activity  protein binding  plasma membrane  integral component of plasma membrane  chemotaxis  immune response  G-protein coupled receptor signaling pathway  positive regulation of cytosolic calcium ion concentration  cell surface  C-C chemokine receptor activity  chemokine-mediated signaling pathway  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway    Intestinal immune network for IgA production   
NDEx NetworkCCR10
Atlas of Cancer Signalling NetworkCCR10
Wikipedia pathwaysCCR10
Orthology - Evolution
OrthoDB2826
GeneTree (enSembl)ENSG00000184451
Phylogenetic Trees/Animal Genes : TreeFamCCR10
HOVERGENP46092
HOGENOMP46092
Homologs : HomoloGeneCCR10
Homology/Alignments : Family Browser (UCSC)CCR10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCR10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCR10
dbVarCCR10
ClinVarCCR10
1000_GenomesCCR10 
Exome Variant ServerCCR10
ExAC (Exome Aggregation Consortium)CCR10 (select the gene name)
Genetic variants : HAPMAP2826
Genomic Variants (DGV)CCR10 [DGVbeta]
DECIPHERCCR10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCR10 
Mutations
ICGC Data PortalCCR10 
TCGA Data PortalCCR10 
Broad Tumor PortalCCR10
OASIS PortalCCR10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCR10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCR10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCR10
DgiDB (Drug Gene Interaction Database)CCR10
DoCM (Curated mutations)CCR10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCR10 (select a term)
intoGenCCR10
Cancer3DCCR10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600240   
Orphanet
MedgenCCR10
Genetic Testing Registry CCR10
NextProtP46092 [Medical]
TSGene2826
GENETestsCCR10
Target ValidationCCR10
Huge Navigator CCR10 [HugePedia]
snp3D : Map Gene to Disease2826
BioCentury BCIQCCR10
ClinGenCCR10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2826
Chemical/Pharm GKB GenePA28862
Clinical trialCCR10
Miscellaneous
canSAR (ICR)CCR10 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCR10
EVEXCCR10
GoPubMedCCR10
iHOPCCR10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:09 CEST 2017

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