Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCT5 (chaperonin containing TCP1 subunit 5)

Identity

Alias (NCBI)CCT-epsilon
CCTE
HEL-S-69
PNAS-102
TCP-1-epsilon
HGNC (Hugo) CCT5
HGNC Alias symbKIAA0098
HGNC Previous namechaperonin containing TCP1, subunit 5 (epsilon)
LocusID (NCBI) 22948
Atlas_Id 49762
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 10250280 and ends at 10266389 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCT5 (5p15.2) / CCT5 (5p15.2)SEC61A1 (3q21.3) / CCT5 (5p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CCT5   1618
LRG (Locus Reference Genomic)LRG_361
Cards
Entrez_Gene (NCBI)CCT5  22948  chaperonin containing TCP1 subunit 5
AliasesCCT-epsilon; CCTE; HEL-S-69; PNAS-102; 
TCP-1-epsilon
GeneCards (Weizmann)CCT5
Ensembl hg19 (Hinxton)ENSG00000150753 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150753 [Gene_View]  ENSG00000150753 [Sequence]  chr5:10250280-10266389 [Contig_View]  CCT5 [Vega]
ICGC DataPortalENSG00000150753
TCGA cBioPortalCCT5
AceView (NCBI)CCT5
Genatlas (Paris)CCT5
WikiGenes22948
SOURCE (Princeton)CCT5
Genetics Home Reference (NIH)CCT5
Genomic and cartography
GoldenPath hg38 (UCSC)CCT5  -     chr5:10250280-10266389 +  5p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCT5  -     5p15.2   [Description]    (hg19-Feb_2009)
GoldenPathCCT5 - 5p15.2 [CytoView hg19]  CCT5 - 5p15.2 [CytoView hg38]
ImmunoBaseENSG00000150753
genome Data Viewer NCBICCT5 [Mapview hg19]  
OMIM256840   610150   
Gene and transcription
Genbank (Entrez)AF275798 AI290125 AI470998 AJ012489 AK289353
RefSeq transcript (Entrez)NM_001306153 NM_001306154 NM_001306155 NM_001306156 NM_012073
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCT5
Alternative Splicing GalleryENSG00000150753
Gene ExpressionCCT5 [ NCBI-GEO ]   CCT5 [ EBI - ARRAY_EXPRESS ]   CCT5 [ SEEK ]   CCT5 [ MEM ]
Gene Expression Viewer (FireBrowse)CCT5 [ Firebrowse - Broad ]
GenevisibleExpression of CCT5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22948
GTEX Portal (Tissue expression)CCT5
Human Protein AtlasENSG00000150753-CCT5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48643   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48643  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48643
Splice isoforms : SwissVarP48643
PhosPhoSitePlusP48643
Domaine pattern : Prosite (Expaxy)TCP1_1 (PS00750)    TCP1_2 (PS00751)    TCP1_3 (PS00995)   
Domains : Interpro (EBI)Chaperone_TCP-1    Chaperonin_TCP-1_CS    Cpn60/TCP-1    GroEL-like_apical_dom_sf    GROEL-like_equatorial_sf    TCP-1-like_intermed_sf   
Domain families : Pfam (Sanger)Cpn60_TCP1 (PF00118)   
Domain families : Pfam (NCBI)pfam00118   
Conserved Domain (NCBI)CCT5
DMDM Disease mutations22948
Blocks (Seattle)CCT5
PDB (RSDB)5UYX    5UYZ    6NR8    6NR9    6NRA    6NRB    6NRC    6NRD    6QB8   
PDB Europe5UYX    5UYZ    6NR8    6NR9    6NRA    6NRB    6NRC    6NRD    6QB8   
PDB (PDBSum)5UYX    5UYZ    6NR8    6NR9    6NRA    6NRB    6NRC    6NRD    6QB8   
PDB (IMB)5UYX    5UYZ    6NR8    6NR9    6NRA    6NRB    6NRC    6NRD    6QB8   
Structural Biology KnowledgeBase5UYX    5UYZ    6NR8    6NR9    6NRA    6NRB    6NRC    6NRD    6QB8   
SCOP (Structural Classification of Proteins)5UYX    5UYZ    6NR8    6NR9    6NRA    6NRB    6NRC    6NRD    6QB8   
CATH (Classification of proteins structures)5UYX    5UYZ    6NR8    6NR9    6NRA    6NRB    6NRC    6NRD    6QB8   
SuperfamilyP48643
Human Protein Atlas [tissue]ENSG00000150753-CCT5 [tissue]
Peptide AtlasP48643
HPRD06468
IPIIPI00010720   IPI00964855   IPI00921281   IPI00964079   IPI00965722   IPI00964338   IPI00966991   IPI00966038   IPI00965269   IPI00940257   
Protein Interaction databases
DIP (DOE-UCLA)P48643
IntAct (EBI)P48643
FunCoupENSG00000150753
BioGRIDCCT5
STRING (EMBL)CCT5
ZODIACCCT5
Ontologies - Pathways
QuickGOP48643
Ontology : AmiGOmRNA 3'-UTR binding  protein binding  ATP binding  centrosome  cytosol  chaperonin-containing T-complex  chaperonin-containing T-complex  chaperonin-containing T-complex  microtubule  protein folding  binding of sperm to zona pellucida  response to virus  G-protein beta-subunit binding  positive regulation of telomere maintenance via telomerase  cell body  mRNA 5'-UTR binding  beta-tubulin binding  protein stabilization  unfolded protein binding  extracellular exosome  toxin transport  positive regulation of establishment of protein localization to telomere  positive regulation of protein localization to Cajal body  positive regulation of telomerase RNA localization to Cajal body  
Ontology : EGO-EBImRNA 3'-UTR binding  protein binding  ATP binding  centrosome  cytosol  chaperonin-containing T-complex  chaperonin-containing T-complex  chaperonin-containing T-complex  microtubule  protein folding  binding of sperm to zona pellucida  response to virus  G-protein beta-subunit binding  positive regulation of telomere maintenance via telomerase  cell body  mRNA 5'-UTR binding  beta-tubulin binding  protein stabilization  unfolded protein binding  extracellular exosome  toxin transport  positive regulation of establishment of protein localization to telomere  positive regulation of protein localization to Cajal body  positive regulation of telomerase RNA localization to Cajal body  
NDEx NetworkCCT5
Atlas of Cancer Signalling NetworkCCT5
Wikipedia pathwaysCCT5
Orthology - Evolution
OrthoDB22948
GeneTree (enSembl)ENSG00000150753
Phylogenetic Trees/Animal Genes : TreeFamCCT5
HOGENOMP48643
Homologs : HomoloGeneCCT5
Homology/Alignments : Family Browser (UCSC)CCT5
Gene fusions - Rearrangements
Fusion : QuiverCCT5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCT5
dbVarCCT5
ClinVarCCT5
MonarchCCT5
1000_GenomesCCT5 
Exome Variant ServerCCT5
GNOMAD BrowserENSG00000150753
Varsome BrowserCCT5
Genetic variants : HAPMAP22948
Genomic Variants (DGV)CCT5 [DGVbeta]
DECIPHERCCT5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCT5 
Mutations
ICGC Data PortalCCT5 
TCGA Data PortalCCT5 
Broad Tumor PortalCCT5
OASIS PortalCCT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCT5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCT5
Mutations and Diseases : HGMDCCT5
intOGen PortalCCT5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCT5
DgiDB (Drug Gene Interaction Database)CCT5
DoCM (Curated mutations)CCT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCT5 (select a term)
intoGenCCT5
Cancer3DCCT5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM256840    610150   
Orphanet16922   
DisGeNETCCT5
MedgenCCT5
Genetic Testing Registry CCT5
NextProtP48643 [Medical]
TSGene22948
GENETestsCCT5
Target ValidationCCT5
Huge Navigator CCT5 [HugePedia]
snp3D : Map Gene to Disease22948
BioCentury BCIQCCT5
ClinGenCCT5
Clinical trials, drugs, therapy
Protein Interactions : CTD22948
Pharm GKB GenePA26182
Clinical trialCCT5
Miscellaneous
canSAR (ICR)CCT5 (select the gene name)
HarmonizomeCCT5
DataMed IndexCCT5
Probes
Litterature
PubMed200 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCT5
EVEXCCT5
GoPubMedCCT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 14 14:04:57 CEST 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.