Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CCT6A (chaperonin containing TCP1 subunit 6A)

Identity

Alias_namesCCT6
chaperonin containing TCP1
Alias_symbol (synonym)TTCP20
TCPZ
Cctz
HTR3
TCP20
Other aliasCCT-zeta
CCT-zeta-1
MoDP-2
TCP-1-zeta
HGNC (Hugo) CCT6A
LocusID (NCBI) 908
Atlas_Id 43884
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 56051685 and ends at 56063989 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCT6A   1620
Cards
Entrez_Gene (NCBI)CCT6A  908  chaperonin containing TCP1 subunit 6A
AliasesCCT-zeta; CCT-zeta-1; CCT6; Cctz; 
HTR3; MoDP-2; TCP-1-zeta; TCP20; TCPZ; TTCP20
GeneCards (Weizmann)CCT6A
Ensembl hg19 (Hinxton)ENSG00000146731 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146731 [Gene_View]  ENSG00000146731 [Sequence]  chr7:56051685-56063989 [Contig_View]  CCT6A [Vega]
ICGC DataPortalENSG00000146731
TCGA cBioPortalCCT6A
AceView (NCBI)CCT6A
Genatlas (Paris)CCT6A
WikiGenes908
SOURCE (Princeton)CCT6A
Genetics Home Reference (NIH)CCT6A
Genomic and cartography
GoldenPath hg38 (UCSC)CCT6A  -     chr7:56051685-56063989 +  7p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCT6A  -     7p11.2   [Description]    (hg19-Feb_2009)
EnsemblCCT6A - 7p11.2 [CytoView hg19]  CCT6A - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBICCT6A [Mapview hg19]  CCT6A [Mapview hg38]
OMIM104613   
Gene and transcription
Genbank (Entrez)AB063318 AB209728 AF385084 AK297751 AK298371
RefSeq transcript (Entrez)NM_001009186 NM_001762
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCT6A
Cluster EST : UnigeneHs.82916 [ NCBI ]
CGAP (NCI)Hs.82916
Alternative Splicing GalleryENSG00000146731
Gene ExpressionCCT6A [ NCBI-GEO ]   CCT6A [ EBI - ARRAY_EXPRESS ]   CCT6A [ SEEK ]   CCT6A [ MEM ]
Gene Expression Viewer (FireBrowse)CCT6A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)908
GTEX Portal (Tissue expression)CCT6A
Human Protein AtlasENSG00000146731-CCT6A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40227   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40227  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40227
Splice isoforms : SwissVarP40227
PhosPhoSitePlusP40227
Domaine pattern : Prosite (Expaxy)TCP1_1 (PS00750)    TCP1_2 (PS00751)    TCP1_3 (PS00995)   
Domains : Interpro (EBI)Chap_CCT_zeta    Chaperone_TCP-1    Chaperonin_TCP-1_CS    Cpn60/TCP-1    GroEL-like_apical_dom_sf    GROEL-like_equatorial_sf    TCP-1-like_intermed_sf   
Domain families : Pfam (Sanger)Cpn60_TCP1 (PF00118)   
Domain families : Pfam (NCBI)pfam00118   
Conserved Domain (NCBI)CCT6A
DMDM Disease mutations908
Blocks (Seattle)CCT6A
SuperfamilyP40227
Human Protein Atlas [tissue]ENSG00000146731-CCT6A [tissue]
Peptide AtlasP40227
HPRD00089
IPIIPI00027626   IPI01013273   IPI01013629   IPI00552590   
Protein Interaction databases
DIP (DOE-UCLA)P40227
IntAct (EBI)P40227
FunCoupENSG00000146731
BioGRIDCCT6A
STRING (EMBL)CCT6A
ZODIACCCT6A
Ontologies - Pathways
QuickGOP40227
Ontology : AmiGORNA binding  protein binding  ATP binding  cytoplasm  cytosol  cytosol  chaperonin-containing T-complex  chaperonin-containing T-complex  chaperonin-containing T-complex  microtubule  protein folding  positive regulation of telomere maintenance via telomerase  protein stabilization  unfolded protein binding  extracellular exosome  WD40-repeat domain binding  positive regulation of establishment of protein localization to telomere  positive regulation of protein localization to Cajal body  positive regulation of telomerase RNA localization to Cajal body  
Ontology : EGO-EBIRNA binding  protein binding  ATP binding  cytoplasm  cytosol  cytosol  chaperonin-containing T-complex  chaperonin-containing T-complex  chaperonin-containing T-complex  microtubule  protein folding  positive regulation of telomere maintenance via telomerase  protein stabilization  unfolded protein binding  extracellular exosome  WD40-repeat domain binding  positive regulation of establishment of protein localization to telomere  positive regulation of protein localization to Cajal body  positive regulation of telomerase RNA localization to Cajal body  
NDEx NetworkCCT6A
Atlas of Cancer Signalling NetworkCCT6A
Wikipedia pathwaysCCT6A
Orthology - Evolution
OrthoDB908
GeneTree (enSembl)ENSG00000146731
Phylogenetic Trees/Animal Genes : TreeFamCCT6A
HOGENOMP40227
Homologs : HomoloGeneCCT6A
Homology/Alignments : Family Browser (UCSC)CCT6A
Gene fusions - Rearrangements
Fusion : QuiverCCT6A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCT6A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCT6A
dbVarCCT6A
ClinVarCCT6A
1000_GenomesCCT6A 
Exome Variant ServerCCT6A
ExAC (Exome Aggregation Consortium)ENSG00000146731
GNOMAD BrowserENSG00000146731
Varsome BrowserCCT6A
Genetic variants : HAPMAP908
Genomic Variants (DGV)CCT6A [DGVbeta]
DECIPHERCCT6A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCT6A 
Mutations
ICGC Data PortalCCT6A 
TCGA Data PortalCCT6A 
Broad Tumor PortalCCT6A
OASIS PortalCCT6A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCT6A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCT6A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCT6A
DgiDB (Drug Gene Interaction Database)CCT6A
DoCM (Curated mutations)CCT6A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCT6A (select a term)
intoGenCCT6A
Cancer3DCCT6A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104613   
Orphanet
DisGeNETCCT6A
MedgenCCT6A
Genetic Testing Registry CCT6A
NextProtP40227 [Medical]
TSGene908
GENETestsCCT6A
Target ValidationCCT6A
Huge Navigator CCT6A [HugePedia]
snp3D : Map Gene to Disease908
BioCentury BCIQCCT6A
ClinGenCCT6A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD908
Chemical/Pharm GKB GenePA26183
Clinical trialCCT6A
Miscellaneous
canSAR (ICR)CCT6A (select the gene name)
DataMed IndexCCT6A
Probes
Litterature
PubMed117 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCT6A
EVEXCCT6A
GoPubMedCCT6A
iHOPCCT6A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Feb 14 16:22:03 CET 2019
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