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CD209 (CD209 molecule)

Identity

Alias_namesCD209 antigen
Alias_symbol (synonym)DC-SIGN
CDSIGN
DC-SIGN1
CLEC4L
Other alias
HGNC (Hugo) CD209
LocusID (NCBI) 30835
Atlas_Id 46435
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7739995 and ends at 7747578 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  Mediastinal Gray Zone Lymphoma


External links

Nomenclature
HGNC (Hugo)CD209   1641
Cards
Entrez_Gene (NCBI)CD209  30835  CD209 molecule
AliasesCDSIGN; CLEC4L; DC-SIGN; DC-SIGN1
GeneCards (Weizmann)CD209
Ensembl hg19 (Hinxton)ENSG00000090659 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000090659 [Gene_View]  chr19:7739995-7747578 [Contig_View]  CD209 [Vega]
ICGC DataPortalENSG00000090659
TCGA cBioPortalCD209
AceView (NCBI)CD209
Genatlas (Paris)CD209
WikiGenes30835
SOURCE (Princeton)CD209
Genetics Home Reference (NIH)CD209
Genomic and cartography
GoldenPath hg38 (UCSC)CD209  -     chr19:7739995-7747578 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD209  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblCD209 - 19p13.2 [CytoView hg19]  CD209 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBICD209 [Mapview hg19]  CD209 [Mapview hg38]
OMIM604672   607948   609423   614371   
Gene and transcription
Genbank (Entrez)AF290886 AK057212 AK293089 AK304190 AK308595
RefSeq transcript (Entrez)NM_001144893 NM_001144894 NM_001144895 NM_001144896 NM_001144897 NM_001144899 NM_021155
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD209
Cluster EST : UnigeneHs.278694 [ NCBI ]
CGAP (NCI)Hs.278694
Alternative Splicing GalleryENSG00000090659
Gene ExpressionCD209 [ NCBI-GEO ]   CD209 [ EBI - ARRAY_EXPRESS ]   CD209 [ SEEK ]   CD209 [ MEM ]
Gene Expression Viewer (FireBrowse)CD209 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30835
GTEX Portal (Tissue expression)CD209
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NNX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NNX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NNX6
Splice isoforms : SwissVarQ9NNX6
PhosPhoSitePlusQ9NNX6
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    C-type_lectin_CS    CD209-like_CTLD    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CD209
DMDM Disease mutations30835
Blocks (Seattle)CD209
PDB (SRS)1K9I    1SL4    1SL5    2B6B    2IT5    2IT6    2XR5    2XR6   
PDB (PDBSum)1K9I    1SL4    1SL5    2B6B    2IT5    2IT6    2XR5    2XR6   
PDB (IMB)1K9I    1SL4    1SL5    2B6B    2IT5    2IT6    2XR5    2XR6   
PDB (RSDB)1K9I    1SL4    1SL5    2B6B    2IT5    2IT6    2XR5    2XR6   
Structural Biology KnowledgeBase1K9I    1SL4    1SL5    2B6B    2IT5    2IT6    2XR5    2XR6   
SCOP (Structural Classification of Proteins)1K9I    1SL4    1SL5    2B6B    2IT5    2IT6    2XR5    2XR6   
CATH (Classification of proteins structures)1K9I    1SL4    1SL5    2B6B    2IT5    2IT6    2XR5    2XR6   
SuperfamilyQ9NNX6
Human Protein AtlasENSG00000090659
Peptide AtlasQ9NNX6
HPRD05241
IPIIPI00872805   IPI00410201   IPI00382673   IPI00045017   IPI00410204   IPI00410289   IPI00290007   IPI00382677   IPI00290006   IPI00045033   IPI00410294   IPI00410295   IPI00382675   IPI01009365   IPI00922380   
Protein Interaction databases
DIP (DOE-UCLA)Q9NNX6
IntAct (EBI)Q9NNX6
FunCoupENSG00000090659
BioGRIDCD209
STRING (EMBL)CD209
ZODIACCD209
Ontologies - Pathways
QuickGOQ9NNX6
Ontology : AmiGOvirus receptor activity  stimulatory C-type lectin receptor signaling pathway  adaptive immune response  protein binding  mannose binding  cytoplasm  plasma membrane  endocytosis  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  leukocyte cell-cell adhesion  external side of plasma membrane  cell surface  cell-cell recognition  membrane  integral component of membrane  modulation by virus of host morphology or physiology  virion attachment to host cell  viral genome replication  antigen processing and presentation  carbohydrate binding  intracellular signal transduction  regulation of T cell proliferation  peptide antigen binding  innate immune response  viral entry into host cell  virion binding  metal ion binding  peptide antigen transport  extracellular exosome  intracellular transport of virus  
Ontology : EGO-EBIvirus receptor activity  stimulatory C-type lectin receptor signaling pathway  adaptive immune response  protein binding  mannose binding  cytoplasm  plasma membrane  endocytosis  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  leukocyte cell-cell adhesion  external side of plasma membrane  cell surface  cell-cell recognition  membrane  integral component of membrane  modulation by virus of host morphology or physiology  virion attachment to host cell  viral genome replication  antigen processing and presentation  carbohydrate binding  intracellular signal transduction  regulation of T cell proliferation  peptide antigen binding  innate immune response  viral entry into host cell  virion binding  metal ion binding  peptide antigen transport  extracellular exosome  intracellular transport of virus  
Pathways : KEGGPhagosome    Tuberculosis    Measles   
NDEx NetworkCD209
Atlas of Cancer Signalling NetworkCD209
Wikipedia pathwaysCD209
Orthology - Evolution
OrthoDB30835
GeneTree (enSembl)ENSG00000090659
Phylogenetic Trees/Animal Genes : TreeFamCD209
HOVERGENQ9NNX6
HOGENOMQ9NNX6
Homologs : HomoloGeneCD209
Homology/Alignments : Family Browser (UCSC)CD209
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD209 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD209
dbVarCD209
ClinVarCD209
1000_GenomesCD209 
Exome Variant ServerCD209
ExAC (Exome Aggregation Consortium)CD209 (select the gene name)
Genetic variants : HAPMAP30835
Genomic Variants (DGV)CD209 [DGVbeta]
DECIPHERCD209 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD209 
Mutations
ICGC Data PortalCD209 
TCGA Data PortalCD209 
Broad Tumor PortalCD209
OASIS PortalCD209 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD209  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD209
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)TBsLVD Tuberculosis susceptibility Locus Variation Database
LOVD (Leiden Open Variation Database)Pharmacogenomics of Infectious Diseases (PGx_IfD )
BioMutasearch CD209
DgiDB (Drug Gene Interaction Database)CD209
DoCM (Curated mutations)CD209 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD209 (select a term)
intoGenCD209
Cancer3DCD209(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604672    607948    609423    614371   
Orphanet
MedgenCD209
Genetic Testing Registry CD209
NextProtQ9NNX6 [Medical]
TSGene30835
GENETestsCD209
Target ValidationCD209
Huge Navigator CD209 [HugePedia]
snp3D : Map Gene to Disease30835
BioCentury BCIQCD209
ClinGenCD209
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD30835
Chemical/Pharm GKB GenePA26199
Clinical trialCD209
Miscellaneous
canSAR (ICR)CD209 (select the gene name)
Probes
Litterature
PubMed379 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD209
EVEXCD209
GoPubMedCD209
iHOPCD209
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:49:10 CEST 2017

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