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CD52 (CD52 molecule)

Identity

Alias_namesCDW52
CD52 antigen (CAMPATH-1 antigen)
Other aliasEDDM5
HGNC (Hugo) CD52
LocusID (NCBI) 1043
Atlas_Id 40043
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26317920 and ends at 26320523 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CELSR1 (22q13.31) / CD52 (1p36.11)FN1 (2q35) / CD52 (1p36.11)CELSR1 22q13.31 / CD52 1p36.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD52   1804
Cards
Entrez_Gene (NCBI)CD52  1043  CD52 molecule
AliasesCDW52; EDDM5
GeneCards (Weizmann)CD52
Ensembl hg19 (Hinxton)ENSG00000169442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169442 [Gene_View]  chr1:26317920-26320523 [Contig_View]  CD52 [Vega]
ICGC DataPortalENSG00000169442
TCGA cBioPortalCD52
AceView (NCBI)CD52
Genatlas (Paris)CD52
WikiGenes1043
SOURCE (Princeton)CD52
Genetics Home Reference (NIH)CD52
Genomic and cartography
GoldenPath hg38 (UCSC)CD52  -     chr1:26317920-26320523 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD52  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblCD52 - 1p36.11 [CytoView hg19]  CD52 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBICD52 [Mapview hg19]  CD52 [Mapview hg38]
OMIM114280   
Gene and transcription
Genbank (Entrez)A23013 AK311554 BC000644 BI835519 BT007116
RefSeq transcript (Entrez)NM_001803
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD52
Cluster EST : UnigeneHs.276770 [ NCBI ]
CGAP (NCI)Hs.276770
Alternative Splicing GalleryENSG00000169442
Gene ExpressionCD52 [ NCBI-GEO ]   CD52 [ EBI - ARRAY_EXPRESS ]   CD52 [ SEEK ]   CD52 [ MEM ]
Gene Expression Viewer (FireBrowse)CD52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1043
GTEX Portal (Tissue expression)CD52
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31358   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31358  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31358
Splice isoforms : SwissVarP31358
PhosPhoSitePlusP31358
Domains : Interpro (EBI)CAMPATH-1   
Domain families : Pfam (Sanger)CD52 (PF15116)   
Domain families : Pfam (NCBI)pfam15116   
Conserved Domain (NCBI)CD52
DMDM Disease mutations1043
Blocks (Seattle)CD52
SuperfamilyP31358
Human Protein AtlasENSG00000169442
Peptide AtlasP31358
HPRD00257
IPIIPI00306137   
Protein Interaction databases
DIP (DOE-UCLA)P31358
IntAct (EBI)P31358
FunCoupENSG00000169442
BioGRIDCD52
STRING (EMBL)CD52
ZODIACCD52
Ontologies - Pathways
QuickGOP31358
Ontology : AmiGOextracellular region  plasma membrane  integral component of plasma membrane  C-terminal protein lipidation  positive regulation of cytosolic calcium ion concentration  membrane  anchored component of membrane  respiratory burst  
Ontology : EGO-EBIextracellular region  plasma membrane  integral component of plasma membrane  C-terminal protein lipidation  positive regulation of cytosolic calcium ion concentration  membrane  anchored component of membrane  respiratory burst  
NDEx NetworkCD52
Atlas of Cancer Signalling NetworkCD52
Wikipedia pathwaysCD52
Orthology - Evolution
OrthoDB1043
GeneTree (enSembl)ENSG00000169442
Phylogenetic Trees/Animal Genes : TreeFamCD52
HOVERGENP31358
HOGENOMP31358
Homologs : HomoloGeneCD52
Homology/Alignments : Family Browser (UCSC)CD52
Gene fusions - Rearrangements
Fusion : MitelmanCELSR1/CD52 [22q13.31/1p36.11]  [t(1;22)(p36;q13)]  
Fusion: TCGACELSR1 22q13.31 CD52 1p36.11 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD52
dbVarCD52
ClinVarCD52
1000_GenomesCD52 
Exome Variant ServerCD52
ExAC (Exome Aggregation Consortium)CD52 (select the gene name)
Genetic variants : HAPMAP1043
Genomic Variants (DGV)CD52 [DGVbeta]
DECIPHERCD52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD52 
Mutations
ICGC Data PortalCD52 
TCGA Data PortalCD52 
Broad Tumor PortalCD52
OASIS PortalCD52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD52
DgiDB (Drug Gene Interaction Database)CD52
DoCM (Curated mutations)CD52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD52 (select a term)
intoGenCD52
Cancer3DCD52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114280   
Orphanet
MedgenCD52
Genetic Testing Registry CD52
NextProtP31358 [Medical]
TSGene1043
GENETestsCD52
Target ValidationCD52
Huge Navigator CD52 [HugePedia]
snp3D : Map Gene to Disease1043
BioCentury BCIQCD52
ClinGenCD52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1043
Chemical/Pharm GKB GenePA26350
Clinical trialCD52
Miscellaneous
canSAR (ICR)CD52 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD52
EVEXCD52
GoPubMedCD52
iHOPCD52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:27:28 CEST 2017

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