Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CD58 (CD58 molecule)

Identity

Other namesLFA-3
LFA3
ag3
HGNC (Hugo) CD58
LocusID (NCBI) 965
Location 1p13.1
Location_base_pair Starts at 117061322 and ends at 117113715 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CD58   1688
Cards
Entrez_Gene (NCBI)CD58  965  CD58 molecule
GeneCards (Weizmann)CD58
Ensembl (Hinxton)ENSG00000116815 [Gene_View]  chr1:117061322-117113715 [Contig_View]  CD58 [Vega]
ICGC DataPortalENSG00000116815
cBioPortalCD58
AceView (NCBI)CD58
Genatlas (Paris)CD58
WikiGenes965
SOURCE (Princeton)NM_001144822 NM_001779
Genomic and cartography
GoldenPath (UCSC)CD58  -  1p13.1   chr1:117061322-117113715 -  1p13.1   [Description]    (hg19-Feb_2009)
EnsemblCD58 - 1p13.1 [CytoView]
Mapping of homologs : NCBICD58 [Mapview]
OMIM153420   
Gene and transcription
Genbank (Entrez)AK125710 AK291980 BC005930 BT019816 BT019817
RefSeq transcript (Entrez)NM_001144822 NM_001779
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838594 NW_004929290
Consensus coding sequences : CCDS (NCBI)CD58
Cluster EST : UnigeneHs.34341 [ NCBI ]
CGAP (NCI)Hs.34341
Alternative Splicing : Fast-db (Paris)GSHG0002395
Alternative Splicing GalleryENSG00000116815
Gene ExpressionCD58 [ NCBI-GEO ]     CD58 [ SEEK ]   CD58 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP19256 (Uniprot)
NextProtP19256  [Medical]
With graphics : InterProP19256
Splice isoforms : SwissVarP19256 (Swissvar)
Domains : Interpro (EBI)Ig-like_fold [organisation]   Ig_sub [organisation]   Lymphocyte_func-assoc_Ag_3 [organisation]  
Related proteins : CluSTrP19256
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  
DMDM Disease mutations965
Blocks (Seattle)P19256
PDB (SRS)1CCZ    1CI5    1QA9   
PDB (PDBSum)1CCZ    1CI5    1QA9   
PDB (IMB)1CCZ    1CI5    1QA9   
PDB (RSDB)1CCZ    1CI5    1QA9   
Human Protein AtlasENSG00000116815 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP19256
HPRD01081
IPIIPI00017529   IPI00984332   IPI00942320   IPI00000059   IPI00646548   
Protein Interaction databases
DIP (DOE-UCLA)P19256
IntAct (EBI)P19256
FunCoupENSG00000116815
BioGRIDCD58
InParanoidP19256
Interologous Interaction database P19256
IntegromeDBCD58
STRING (EMBL)CD58
Ontologies - Pathways
Ontology : AmiGOreceptor binding  protein binding  plasma membrane  integral component of plasma membrane  cell adhesion  blood coagulation  cell surface  membrane  single organismal cell-cell adhesion  anchored component of membrane  heterotypic cell-cell adhesion  leukocyte migration  extracellular vesicular exosome  cellular response to interferon-gamma  cellular response to tumor necrosis factor  positive regulation of interleukin-8 secretion  
Ontology : EGO-EBIreceptor binding  protein binding  plasma membrane  integral component of plasma membrane  cell adhesion  blood coagulation  cell surface  membrane  single organismal cell-cell adhesion  anchored component of membrane  heterotypic cell-cell adhesion  leukocyte migration  extracellular vesicular exosome  cellular response to interferon-gamma  cellular response to tumor necrosis factor  positive regulation of interleukin-8 secretion  
Pathways : BIOCARTAIL 17 Signaling Pathway [Genes]   
Pathways : KEGGCell adhesion molecules (CAMs)    Epstein-Barr virus infection   
Protein Interaction DatabaseCD58
Wikipedia pathwaysCD58
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CD58
snp3D : Map Gene to Disease965
SNP (GeneSNP Utah)CD58
SNP : HGBaseCD58
Genetic variants : HAPMAPCD58
Exome VariantCD58
1000_GenomesCD58 
ICGC programENSG00000116815 
Somatic Mutations in Cancer : COSMICCD58 
CONAN: Copy Number AnalysisCD58 
Mutations and Diseases : HGMDCD58
Mutations and Diseases : intOGenCD58
Genomic VariantsCD58  CD58 [DGVbeta]
dbVarCD58
ClinVarCD58
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM153420   
MedgenCD58
GENETestsCD58
Disease Genetic AssociationCD58
Huge Navigator CD58 [HugePedia]  CD58 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCD58
Homology/Alignments : Family Browser (UCSC)CD58
Phylogenetic Trees/Animal Genes : TreeFamCD58
Chemical/Protein Interactions : CTD965
Chemical/Pharm GKB GenePA26227
Clinical trialCD58
Cancer Resource (Charite)ENSG00000116815
Other databases
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
CoreMineCD58
iHOPCD58
OncoSearchCD58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:41:26 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.