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CDCA4 (cell division cycle associated 4)

Identity

Alias_symbol (synonym)FLJ20764
Hepp
Other aliasHEPP
SEI-3/HEPP
HGNC (Hugo) CDCA4
LocusID (NCBI) 55038
Atlas_Id 50473
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 105009573 and ends at 105021088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDCA4 (14q32.33) / CDCA4 (14q32.33)CDCA4 (14q32.33) / PTK2B (8p21.2)SLC27A4 (9q34.11) / CDCA4 (14q32.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDCA4   14625
Cards
Entrez_Gene (NCBI)CDCA4  55038  cell division cycle associated 4
AliasesHEPP; SEI-3/HEPP
GeneCards (Weizmann)CDCA4
Ensembl hg19 (Hinxton)ENSG00000170779 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170779 [Gene_View]  chr14:105009573-105021088 [Contig_View]  CDCA4 [Vega]
ICGC DataPortalENSG00000170779
TCGA cBioPortalCDCA4
AceView (NCBI)CDCA4
Genatlas (Paris)CDCA4
WikiGenes55038
SOURCE (Princeton)CDCA4
Genetics Home Reference (NIH)CDCA4
Genomic and cartography
GoldenPath hg38 (UCSC)CDCA4  -     chr14:105009573-105021088 -  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDCA4  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblCDCA4 - 14q32.33 [CytoView hg19]  CDCA4 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBICDCA4 [Mapview hg19]  CDCA4 [Mapview hg38]
OMIM612270   
Gene and transcription
Genbank (Entrez)AF322239 AK000771 AK303947 BC011736 BC025263
RefSeq transcript (Entrez)NM_017955 NM_145701
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDCA4
Cluster EST : UnigeneHs.34045 [ NCBI ]
CGAP (NCI)Hs.34045
Alternative Splicing GalleryENSG00000170779
Gene ExpressionCDCA4 [ NCBI-GEO ]   CDCA4 [ EBI - ARRAY_EXPRESS ]   CDCA4 [ SEEK ]   CDCA4 [ MEM ]
Gene Expression Viewer (FireBrowse)CDCA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55038
GTEX Portal (Tissue expression)CDCA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXL8
Splice isoforms : SwissVarQ9BXL8
PhosPhoSitePlusQ9BXL8
Domaine pattern : Prosite (Expaxy)SERTA (PS51053)   
Domains : Interpro (EBI)SERTA_dom   
Domain families : Pfam (Sanger)SERTA (PF06031)   
Domain families : Pfam (NCBI)pfam06031   
Conserved Domain (NCBI)CDCA4
DMDM Disease mutations55038
Blocks (Seattle)CDCA4
SuperfamilyQ9BXL8
Human Protein AtlasENSG00000170779
Peptide AtlasQ9BXL8
HPRD13015
IPIIPI00157358   IPI00911103   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXL8
IntAct (EBI)Q9BXL8
FunCoupENSG00000170779
BioGRIDCDCA4
STRING (EMBL)CDCA4
ZODIACCDCA4
Ontologies - Pathways
QuickGOQ9BXL8
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  plasma membrane  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  plasma membrane  
NDEx NetworkCDCA4
Atlas of Cancer Signalling NetworkCDCA4
Wikipedia pathwaysCDCA4
Orthology - Evolution
OrthoDB55038
GeneTree (enSembl)ENSG00000170779
Phylogenetic Trees/Animal Genes : TreeFamCDCA4
HOVERGENQ9BXL8
HOGENOMQ9BXL8
Homologs : HomoloGeneCDCA4
Homology/Alignments : Family Browser (UCSC)CDCA4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDCA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDCA4
dbVarCDCA4
ClinVarCDCA4
1000_GenomesCDCA4 
Exome Variant ServerCDCA4
ExAC (Exome Aggregation Consortium)CDCA4 (select the gene name)
Genetic variants : HAPMAP55038
Genomic Variants (DGV)CDCA4 [DGVbeta]
DECIPHERCDCA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDCA4 
Mutations
ICGC Data PortalCDCA4 
TCGA Data PortalCDCA4 
Broad Tumor PortalCDCA4
OASIS PortalCDCA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDCA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDCA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDCA4
DgiDB (Drug Gene Interaction Database)CDCA4
DoCM (Curated mutations)CDCA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDCA4 (select a term)
intoGenCDCA4
Cancer3DCDCA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612270   
Orphanet
MedgenCDCA4
Genetic Testing Registry CDCA4
NextProtQ9BXL8 [Medical]
TSGene55038
GENETestsCDCA4
Target ValidationCDCA4
Huge Navigator CDCA4 [HugePedia]
snp3D : Map Gene to Disease55038
BioCentury BCIQCDCA4
ClinGenCDCA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55038
Chemical/Pharm GKB GenePA26277
Clinical trialCDCA4
Miscellaneous
canSAR (ICR)CDCA4 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDCA4
EVEXCDCA4
GoPubMedCDCA4
iHOPCDCA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:23 CEST 2017

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