Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CDCA8 (cell division cycle associated 8)

Identity

Alias_symbol (synonym)FLJ12042
MESRGP
BOR
DasraB
Other aliasBOREALIN
HGNC (Hugo) CDCA8
LocusID (NCBI) 55143
Atlas_Id 43750
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 37692401 and ends at 37709719 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDCA8 (1p34.3) / GRIK3 (1p34.3)CDCA8 (1p34.3) / ZNF395 (8p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDCA8   14629
Cards
Entrez_Gene (NCBI)CDCA8  55143  cell division cycle associated 8
AliasesBOR; BOREALIN; DasraB; MESRGP
GeneCards (Weizmann)CDCA8
Ensembl hg19 (Hinxton)ENSG00000134690 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134690 [Gene_View]  chr1:37692401-37709719 [Contig_View]  CDCA8 [Vega]
ICGC DataPortalENSG00000134690
TCGA cBioPortalCDCA8
AceView (NCBI)CDCA8
Genatlas (Paris)CDCA8
WikiGenes55143
SOURCE (Princeton)CDCA8
Genetics Home Reference (NIH)CDCA8
Genomic and cartography
GoldenPath hg38 (UCSC)CDCA8  -     chr1:37692401-37709719 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDCA8  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblCDCA8 - 1p34.3 [CytoView hg19]  CDCA8 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBICDCA8 [Mapview hg19]  CDCA8 [Mapview hg38]
OMIM609977   
Gene and transcription
Genbank (Entrez)AK001330 AK022104 AK022606 AK026423 AK222549
RefSeq transcript (Entrez)NM_001256875 NM_018101
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDCA8
Cluster EST : UnigeneHs.524571 [ NCBI ]
CGAP (NCI)Hs.524571
Alternative Splicing GalleryENSG00000134690
Gene ExpressionCDCA8 [ NCBI-GEO ]   CDCA8 [ EBI - ARRAY_EXPRESS ]   CDCA8 [ SEEK ]   CDCA8 [ MEM ]
Gene Expression Viewer (FireBrowse)CDCA8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55143
GTEX Portal (Tissue expression)CDCA8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53HL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53HL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53HL2
Splice isoforms : SwissVarQ53HL2
PhosPhoSitePlusQ53HL2
Domains : Interpro (EBI)Borealin_N    Cell_div_borealin   
Domain families : Pfam (Sanger)Borealin (PF10512)    Nbl1_Borealin_N (PF10444)   
Domain families : Pfam (NCBI)pfam10512    pfam10444   
Conserved Domain (NCBI)CDCA8
DMDM Disease mutations55143
Blocks (Seattle)CDCA8
PDB (SRS)2KDD    2QFA    2RAW    2RAX   
PDB (PDBSum)2KDD    2QFA    2RAW    2RAX   
PDB (IMB)2KDD    2QFA    2RAW    2RAX   
PDB (RSDB)2KDD    2QFA    2RAW    2RAX   
Structural Biology KnowledgeBase2KDD    2QFA    2RAW    2RAX   
SCOP (Structural Classification of Proteins)2KDD    2QFA    2RAW    2RAX   
CATH (Classification of proteins structures)2KDD    2QFA    2RAW    2RAX   
SuperfamilyQ53HL2
Human Protein AtlasENSG00000134690
Peptide AtlasQ53HL2
HPRD13017
IPIIPI00303099   
Protein Interaction databases
DIP (DOE-UCLA)Q53HL2
IntAct (EBI)Q53HL2
FunCoupENSG00000134690
BioGRIDCDCA8
STRING (EMBL)CDCA8
ZODIACCDCA8
Ontologies - Pathways
QuickGOQ53HL2
Ontology : AmiGOchromosome, centromeric region  protein binding  nucleus  nucleoplasm  nucleolus  cytosol  sister chromatid cohesion  mitotic metaphase plate congression  chromocenter  nuclear body  protein sumoylation  midbody  chromosome passenger complex  protein complex  intercellular bridge  spindle midzone  chromosome organization  cell division  
Ontology : EGO-EBIchromosome, centromeric region  protein binding  nucleus  nucleoplasm  nucleolus  cytosol  sister chromatid cohesion  mitotic metaphase plate congression  chromocenter  nuclear body  protein sumoylation  midbody  chromosome passenger complex  protein complex  intercellular bridge  spindle midzone  chromosome organization  cell division  
NDEx NetworkCDCA8
Atlas of Cancer Signalling NetworkCDCA8
Wikipedia pathwaysCDCA8
Orthology - Evolution
OrthoDB55143
GeneTree (enSembl)ENSG00000134690
Phylogenetic Trees/Animal Genes : TreeFamCDCA8
HOVERGENQ53HL2
HOGENOMQ53HL2
Homologs : HomoloGeneCDCA8
Homology/Alignments : Family Browser (UCSC)CDCA8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDCA8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDCA8
dbVarCDCA8
ClinVarCDCA8
1000_GenomesCDCA8 
Exome Variant ServerCDCA8
ExAC (Exome Aggregation Consortium)CDCA8 (select the gene name)
Genetic variants : HAPMAP55143
Genomic Variants (DGV)CDCA8 [DGVbeta]
DECIPHERCDCA8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDCA8 
Mutations
ICGC Data PortalCDCA8 
TCGA Data PortalCDCA8 
Broad Tumor PortalCDCA8
OASIS PortalCDCA8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDCA8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDCA8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDCA8
DgiDB (Drug Gene Interaction Database)CDCA8
DoCM (Curated mutations)CDCA8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDCA8 (select a term)
intoGenCDCA8
Cancer3DCDCA8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609977   
Orphanet
MedgenCDCA8
Genetic Testing Registry CDCA8
NextProtQ53HL2 [Medical]
TSGene55143
GENETestsCDCA8
Target ValidationCDCA8
Huge Navigator CDCA8 [HugePedia]
snp3D : Map Gene to Disease55143
BioCentury BCIQCDCA8
ClinGenCDCA8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55143
Chemical/Pharm GKB GenePA26281
Clinical trialCDCA8
Miscellaneous
canSAR (ICR)CDCA8 (select the gene name)
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDCA8
EVEXCDCA8
GoPubMedCDCA8
iHOPCDCA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:27:39 CEST 2017

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