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CDKN2AIP (CDKN2A interacting protein)

Identity

Alias_symbol (synonym)FLJ20036
CARF
Other alias
HGNC (Hugo) CDKN2AIP
LocusID (NCBI) 55602
Atlas_Id 50210
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 183444591 and ends at 183449066 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDKN2AIP   24325
Cards
Entrez_Gene (NCBI)CDKN2AIP  55602  CDKN2A interacting protein
AliasesCARF
GeneCards (Weizmann)CDKN2AIP
Ensembl hg19 (Hinxton)ENSG00000168564 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168564 [Gene_View]  chr4:183444591-183449066 [Contig_View]  CDKN2AIP [Vega]
ICGC DataPortalENSG00000168564
TCGA cBioPortalCDKN2AIP
AceView (NCBI)CDKN2AIP
Genatlas (Paris)CDKN2AIP
WikiGenes55602
SOURCE (Princeton)CDKN2AIP
Genetics Home Reference (NIH)CDKN2AIP
Genomic and cartography
GoldenPath hg38 (UCSC)CDKN2AIP  -     chr4:183444591-183449066 +  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDKN2AIP  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblCDKN2AIP - 4q35.1 [CytoView hg19]  CDKN2AIP - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBICDKN2AIP [Mapview hg19]  CDKN2AIP [Mapview hg38]
OMIM615914   
Gene and transcription
Genbank (Entrez)AA622329 AF246705 AK000043 AK096180 AK225848
RefSeq transcript (Entrez)NM_001317343 NM_017632
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDKN2AIP
Cluster EST : UnigeneHs.644077 [ NCBI ]
CGAP (NCI)Hs.644077
Alternative Splicing GalleryENSG00000168564
Gene ExpressionCDKN2AIP [ NCBI-GEO ]   CDKN2AIP [ EBI - ARRAY_EXPRESS ]   CDKN2AIP [ SEEK ]   CDKN2AIP [ MEM ]
Gene Expression Viewer (FireBrowse)CDKN2AIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55602
GTEX Portal (Tissue expression)CDKN2AIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXV6
Splice isoforms : SwissVarQ9NXV6
PhosPhoSitePlusQ9NXV6
Domaine pattern : Prosite (Expaxy)DS_RBD (PS50137)    XTBD (PS51827)   
Domains : Interpro (EBI)dsRBD_dom    XTBD   
Domain families : Pfam (Sanger)XTBD (PF11952)   
Domain families : Pfam (NCBI)pfam11952   
Conserved Domain (NCBI)CDKN2AIP
DMDM Disease mutations55602
Blocks (Seattle)CDKN2AIP
SuperfamilyQ9NXV6
Human Protein AtlasENSG00000168564
Peptide AtlasQ9NXV6
HPRD16683
IPIIPI00968130   IPI00020991   IPI00967578   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXV6
IntAct (EBI)Q9NXV6
FunCoupENSG00000168564
BioGRIDCDKN2AIP
STRING (EMBL)CDKN2AIP
ZODIACCDKN2AIP
Ontologies - Pathways
QuickGOQ9NXV6
Ontology : AmiGOgranular component  p53 binding  RNA binding  protein binding  nucleoplasm  nucleolus  cellular response to DNA damage stimulus  positive regulation of signal transduction  positive regulation of cell growth  negative regulation of cell growth  regulation of protein stability  
Ontology : EGO-EBIgranular component  p53 binding  RNA binding  protein binding  nucleoplasm  nucleolus  cellular response to DNA damage stimulus  positive regulation of signal transduction  positive regulation of cell growth  negative regulation of cell growth  regulation of protein stability  
NDEx NetworkCDKN2AIP
Atlas of Cancer Signalling NetworkCDKN2AIP
Wikipedia pathwaysCDKN2AIP
Orthology - Evolution
OrthoDB55602
GeneTree (enSembl)ENSG00000168564
Phylogenetic Trees/Animal Genes : TreeFamCDKN2AIP
HOVERGENQ9NXV6
HOGENOMQ9NXV6
Homologs : HomoloGeneCDKN2AIP
Homology/Alignments : Family Browser (UCSC)CDKN2AIP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDKN2AIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDKN2AIP
dbVarCDKN2AIP
ClinVarCDKN2AIP
1000_GenomesCDKN2AIP 
Exome Variant ServerCDKN2AIP
ExAC (Exome Aggregation Consortium)CDKN2AIP (select the gene name)
Genetic variants : HAPMAP55602
Genomic Variants (DGV)CDKN2AIP [DGVbeta]
DECIPHERCDKN2AIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDKN2AIP 
Mutations
ICGC Data PortalCDKN2AIP 
TCGA Data PortalCDKN2AIP 
Broad Tumor PortalCDKN2AIP
OASIS PortalCDKN2AIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDKN2AIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDKN2AIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDKN2AIP
DgiDB (Drug Gene Interaction Database)CDKN2AIP
DoCM (Curated mutations)CDKN2AIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDKN2AIP (select a term)
intoGenCDKN2AIP
Cancer3DCDKN2AIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615914   
Orphanet
MedgenCDKN2AIP
Genetic Testing Registry CDKN2AIP
NextProtQ9NXV6 [Medical]
TSGene55602
GENETestsCDKN2AIP
Huge Navigator CDKN2AIP [HugePedia]
snp3D : Map Gene to Disease55602
BioCentury BCIQCDKN2AIP
ClinGenCDKN2AIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55602
Chemical/Pharm GKB GenePA162382149
Clinical trialCDKN2AIP
Miscellaneous
canSAR (ICR)CDKN2AIP (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDKN2AIP
EVEXCDKN2AIP
GoPubMedCDKN2AIP
iHOPCDKN2AIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:10:02 CEST 2017

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