Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CEACAM8 (carcinoembryonic antigen related cell adhesion molecule 8)

Identity

Alias_namesCGM6
carcinoembryonic antigen-related cell adhesion molecule 8
Alias_symbol (synonym)CD66b
Other aliasCD67
NCA-95
HGNC (Hugo) CEACAM8
LocusID (NCBI) 1088
Atlas_Id 40049
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 42580243 and ends at 42594930 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEACAM8   1820
Cards
Entrez_Gene (NCBI)CEACAM8  1088  carcinoembryonic antigen related cell adhesion molecule 8
AliasesCD66b; CD67; CGM6; NCA-95
GeneCards (Weizmann)CEACAM8
Ensembl hg19 (Hinxton)ENSG00000124469 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124469 [Gene_View]  chr19:42580243-42594930 [Contig_View]  CEACAM8 [Vega]
ICGC DataPortalENSG00000124469
TCGA cBioPortalCEACAM8
AceView (NCBI)CEACAM8
Genatlas (Paris)CEACAM8
WikiGenes1088
SOURCE (Princeton)CEACAM8
Genetics Home Reference (NIH)CEACAM8
Genomic and cartography
GoldenPath hg38 (UCSC)CEACAM8  -     chr19:42580243-42594930 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEACAM8  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblCEACAM8 - 19q13.2 [CytoView hg19]  CEACAM8 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICEACAM8 [Mapview hg19]  CEACAM8 [Mapview hg38]
OMIM615747   
Gene and transcription
Genbank (Entrez)AK297012 AK312652 BC026263 D90064 DA464901
RefSeq transcript (Entrez)NM_001816
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEACAM8
Cluster EST : UnigeneHs.41 [ NCBI ]
CGAP (NCI)Hs.41
Alternative Splicing GalleryENSG00000124469
Gene ExpressionCEACAM8 [ NCBI-GEO ]   CEACAM8 [ EBI - ARRAY_EXPRESS ]   CEACAM8 [ SEEK ]   CEACAM8 [ MEM ]
Gene Expression Viewer (FireBrowse)CEACAM8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1088
GTEX Portal (Tissue expression)CEACAM8
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31997   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31997  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31997
Splice isoforms : SwissVarP31997
PhosPhoSitePlusP31997
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)CEACAM8
DMDM Disease mutations1088
Blocks (Seattle)CEACAM8
PDB (SRS)2DKS    4WTZ    4Y88    4YIQ   
PDB (PDBSum)2DKS    4WTZ    4Y88    4YIQ   
PDB (IMB)2DKS    4WTZ    4Y88    4YIQ   
PDB (RSDB)2DKS    4WTZ    4Y88    4YIQ   
Structural Biology KnowledgeBase2DKS    4WTZ    4Y88    4YIQ   
SCOP (Structural Classification of Proteins)2DKS    4WTZ    4Y88    4YIQ   
CATH (Classification of proteins structures)2DKS    4WTZ    4Y88    4YIQ   
SuperfamilyP31997
Human Protein AtlasENSG00000124469
Peptide AtlasP31997
HPRD07630
IPIIPI00013972   
Protein Interaction databases
DIP (DOE-UCLA)P31997
IntAct (EBI)P31997
FunCoupENSG00000124469
BioGRIDCEACAM8
STRING (EMBL)CEACAM8
ZODIACCEACAM8
Ontologies - Pathways
QuickGOP31997
Ontology : AmiGOprotein binding  extracellular space  plasma membrane  integral component of plasma membrane  immune response  anchored component of membrane  azurophil granule membrane  specific granule membrane  neutrophil degranulation  leukocyte migration  extracellular exosome  tertiary granule membrane  
Ontology : EGO-EBIprotein binding  extracellular space  plasma membrane  integral component of plasma membrane  immune response  anchored component of membrane  azurophil granule membrane  specific granule membrane  neutrophil degranulation  leukocyte migration  extracellular exosome  tertiary granule membrane  
NDEx NetworkCEACAM8
Atlas of Cancer Signalling NetworkCEACAM8
Wikipedia pathwaysCEACAM8
Orthology - Evolution
OrthoDB1088
GeneTree (enSembl)ENSG00000124469
Phylogenetic Trees/Animal Genes : TreeFamCEACAM8
HOVERGENP31997
HOGENOMP31997
Homologs : HomoloGeneCEACAM8
Homology/Alignments : Family Browser (UCSC)CEACAM8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEACAM8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEACAM8
dbVarCEACAM8
ClinVarCEACAM8
1000_GenomesCEACAM8 
Exome Variant ServerCEACAM8
ExAC (Exome Aggregation Consortium)CEACAM8 (select the gene name)
Genetic variants : HAPMAP1088
Genomic Variants (DGV)CEACAM8 [DGVbeta]
DECIPHERCEACAM8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEACAM8 
Mutations
ICGC Data PortalCEACAM8 
TCGA Data PortalCEACAM8 
Broad Tumor PortalCEACAM8
OASIS PortalCEACAM8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEACAM8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEACAM8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEACAM8
DgiDB (Drug Gene Interaction Database)CEACAM8
DoCM (Curated mutations)CEACAM8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEACAM8 (select a term)
intoGenCEACAM8
Cancer3DCEACAM8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615747   
Orphanet
MedgenCEACAM8
Genetic Testing Registry CEACAM8
NextProtP31997 [Medical]
TSGene1088
GENETestsCEACAM8
Target ValidationCEACAM8
Huge Navigator CEACAM8 [HugePedia]
snp3D : Map Gene to Disease1088
BioCentury BCIQCEACAM8
ClinGenCEACAM8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1088
Chemical/Pharm GKB GenePA26364
Clinical trialCEACAM8
Miscellaneous
canSAR (ICR)CEACAM8 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEACAM8
EVEXCEACAM8
GoPubMedCEACAM8
iHOPCEACAM8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:33 CEST 2017

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