CHI3L1 (chitinase 3-like 1 (cartilage glycoprotein-39))

Identity

Other names	DKFZp686N19119
	FLJ38139
	GP39
	HC-gp39
	HCGP-3P
	YKL40
	YYL-40
Hugo	CHI3L1
Location	1q32.1
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
Hugo	CHI3L1
GDB	CHI3L1
Entrez_Gene	CHI3L1  1116  chitinase 3-like 1 (cartilage glycoprotein-39)
	Cards
GeneCards	CHI3L1
Ensembl	CHI3L1 [Search_View]   ENSG00000133048 [Gene_View]
Genatlas	CHI3L1
GeneLynx	CHI3L1
eGenome	CHI3L1
euGene	1116
	Genomic and cartography
GoldenPath	CHI3L1  -  1q32.1   chr1:201414682-201422545 -  1q32.1   [Description]    (hg18-March_2006)
Ensembl	CHI3L1 - 1q32.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CHI3L1
	Gene and transcription
Genbank	AB209459 [ ENTREZ ]
Genbank	AK095458 [ ENTREZ ]
Genbank	AK130142 [ ENTREZ ]
Genbank	AK130200 [ ENTREZ ]
Genbank	AK225266 [ ENTREZ ]
RefSeq	NM_001276 [ SRS ]    NM_001276 [ ENTREZ ]
RefSeq	AC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
RefSeq	NC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
RefSeq	NT_004487 [ SRS ]    NT_004487 [ ENTREZ ]
RefSeq	NW_926128 [ SRS ]    NW_926128 [ ENTREZ ]
AceView	CHI3L1 AceView - NCBI
Unigene	Hs.382202 [ SRS ]    Hs.382202 [ NCBI ]     HS382202 [ spliceNest ]
Fast-db	17728 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P36222 [ SRS]    P36222 [ EXPASY ]     P36222 [ INTERPRO ]
Prosite	PS01095 CHITINASE_18 [ SRS ]    PS01095 CHITINASE_18 [ Expasy ]
Interpro	IPR011583 Chitinase_II [ SRS ]    IPR011583 Chitinase_II [ EBI ]
Interpro	IPR015821 Glyco_hydro18_N [ SRS ]    IPR015821 Glyco_hydro18_N [ EBI ]
Interpro	IPR001223 Glyco_hydro18cat [ SRS ]    IPR001223 Glyco_hydro18cat [ EBI ]
Interpro	IPR001579 Glyco_hydro_18_chit_AS [ SRS ]    IPR001579 Glyco_hydro_18_chit_AS [ EBI ]
Interpro	IPR013781 Glyco_hydro_cat [ SRS ]    IPR013781 Glyco_hydro_cat [ EBI ]
CluSTr	P36222
Pfam	PF00704 Glyco_hydro_18 [ SRS ]    PF00704 Glyco_hydro_18 [ Sanger ]    pfam00704 [ NCBI-CDD ]
Smart	SM00636 Glyco_18 [EMBL]
Prodom	PD000471 Chitinase_II[INRA-Toulouse]
Prodom	P36222 CH3L1_HUMAN [ Domain structure ]   P36222 CH3L1_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P36222
PDB	1HJV [ SRS ]    1HJV [ PdbSum ],   1HJV [ IMB ]   1HJV [ RSDB ]
PDB	1HJW [ SRS ]    1HJW [ PdbSum ],   1HJW [ IMB ]   1HJW [ RSDB ]
PDB	1HJX [ SRS ]    1HJX [ PdbSum ],   1HJX [ IMB ]   1HJX [ RSDB ]
PDB	1LA7 [ SRS ]    1LA7 [ PdbSum ],   1LA7 [ IMB ]   1LA7 [ RSDB ]
PDB	1NWR [ SRS ]    1NWR [ PdbSum ],   1NWR [ IMB ]   1NWR [ RSDB ]
PDB	1NWS [ SRS ]    1NWS [ PdbSum ],   1NWS [ IMB ]   1NWS [ RSDB ]
PDB	1NWT [ SRS ]    1NWT [ PdbSum ],   1NWT [ IMB ]   1NWT [ RSDB ]
PDB	1NWU [ SRS ]    1NWU [ PdbSum ],   1NWU [ IMB ]   1NWU [ RSDB ]
HPRD	03314
	Protein Interaction databases
DIP	P36222
IntAct	P36222
	Polymorphism : SNP, mutations, diseases
OMIM	181500;601525    [ map ]
GENECLINICS	181500;601525
SNP	CHI3L1 [dbSNP-NCBI]
SNP	NM_001276 [SNP-NCI]
SNP	CHI3L1 [GeneSNPs - Utah]  CHI3L1] [HGBASE - SRS]
HAPMAP	CHI3L1 [HAPMAP]
HGMD	CHI3L1
	General knowledge
Family Browser	CHI3L1 [UCSC Family Browser]
SOURCE	NM_001276
SMD	Hs.382202
SAGE	Hs.382202
GO	catalytic activity [Amigo]  catalytic activity
GO	hydrolase activity, hydrolyzing O-glycosyl compounds [Amigo]  hydrolase activity, hydrolyzing O-glycosyl compounds
GO	chitinase activity [Amigo]  chitinase activity
GO	extracellular matrix structural constituent [Amigo]  extracellular matrix structural constituent
GO	sugar binding [Amigo]  sugar binding
GO	extracellular region [Amigo]  extracellular region
GO	proteinaceous extracellular matrix [Amigo]  proteinaceous extracellular matrix
GO	extracellular space [Amigo]  extracellular space
GO	carbohydrate metabolic process [Amigo]  carbohydrate metabolic process
GO	chitin catabolic process [Amigo]  chitin catabolic process
GO	cation binding [Amigo]  cation binding
PubGene	CHI3L1
TreeFam	CHI3L1
CTD	1116 [Comparative Genomics Database]
	Other databases
	Probes
Probe	CHI3L1 Related clones (RZPD - Berlin)
	PubMed
PubMed	45 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu May 22 20:00:54 2008