Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CHMP5 (charged multivesicular body protein 5)

Identity

Alias_namesC9orf83
SNF7DC2
chromosome 9 open reading frame 83
chromatin modifying protein 5
Alias_symbol (synonym)HSPC177
CGI-34
Vps60
Other aliasPNAS-2
HGNC (Hugo) CHMP5
LocusID (NCBI) 51510
Atlas_Id 51321
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 33264877 and ends at 33282067 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHMP5 (9p13.3) / VMP1 (17q23.1)LAMB1 (7q31.1) / CHMP5 (9p13.3)CHMP5 9p13.3 / VMP1 17q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHMP5   26942
Cards
Entrez_Gene (NCBI)CHMP5  51510  charged multivesicular body protein 5
AliasesC9orf83; CGI-34; HSPC177; PNAS-2; 
SNF7DC2; Vps60
GeneCards (Weizmann)CHMP5
Ensembl hg19 (Hinxton)ENSG00000086065 [Gene_View]  chr9:33264877-33282067 [Contig_View]  CHMP5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000086065 [Gene_View]  chr9:33264877-33282067 [Contig_View]  CHMP5 [Vega]
ICGC DataPortalENSG00000086065
TCGA cBioPortalCHMP5
AceView (NCBI)CHMP5
Genatlas (Paris)CHMP5
WikiGenes51510
SOURCE (Princeton)CHMP5
Genetics Home Reference (NIH)CHMP5
Genomic and cartography
GoldenPath hg19 (UCSC)CHMP5  -     chr9:33264877-33282067 +  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHMP5  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblCHMP5 - 9p13.3 [CytoView hg19]  CHMP5 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBICHMP5 [Mapview hg19]  CHMP5 [Mapview hg38]
OMIM610900   
Gene and transcription
Genbank (Entrez)AF132968 AF161525 AF229832 AF275810 AI128062
RefSeq transcript (Entrez)NM_001195536 NM_016410
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)CHMP5
Cluster EST : UnigeneHs.635313 [ NCBI ]
CGAP (NCI)Hs.635313
Alternative Splicing GalleryENSG00000086065
Gene ExpressionCHMP5 [ NCBI-GEO ]   CHMP5 [ EBI - ARRAY_EXPRESS ]   CHMP5 [ SEEK ]   CHMP5 [ MEM ]
Gene Expression Viewer (FireBrowse)CHMP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51510
GTEX Portal (Tissue expression)CHMP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZZ3
Splice isoforms : SwissVarQ9NZZ3
PhosPhoSitePlusQ9NZZ3
Domains : Interpro (EBI)Snf7_fam   
Domain families : Pfam (Sanger)Snf7 (PF03357)   
Domain families : Pfam (NCBI)pfam03357   
Conserved Domain (NCBI)CHMP5
DMDM Disease mutations51510
Blocks (Seattle)CHMP5
PDB (SRS)2LXM    3ULY    3UM0    3UM1    3UM2    4TXR   
PDB (PDBSum)2LXM    3ULY    3UM0    3UM1    3UM2    4TXR   
PDB (IMB)2LXM    3ULY    3UM0    3UM1    3UM2    4TXR   
PDB (RSDB)2LXM    3ULY    3UM0    3UM1    3UM2    4TXR   
Structural Biology KnowledgeBase2LXM    3ULY    3UM0    3UM1    3UM2    4TXR   
SCOP (Structural Classification of Proteins)2LXM    3ULY    3UM0    3UM1    3UM2    4TXR   
CATH (Classification of proteins structures)2LXM    3ULY    3UM0    3UM1    3UM2    4TXR   
SuperfamilyQ9NZZ3
Human Protein AtlasENSG00000086065
Peptide AtlasQ9NZZ3
HPRD15408
IPIIPI00100796   IPI00981695   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZZ3
IntAct (EBI)Q9NZZ3
FunCoupENSG00000086065
BioGRIDCHMP5
STRING (EMBL)CHMP5
ZODIACCHMP5
Ontologies - Pathways
QuickGOQ9NZZ3
Ontology : AmiGOcell separation after cytokinesis  regulation of receptor recycling  protein binding  nucleus  cytosol  cytosol  nucleus organization  lysosome organization  mitotic metaphase plate congression  endosome to lysosome transport  endosome membrane  regulation of centrosome duplication  protein transport  endosomal transport  viral life cycle  multivesicular body assembly  viral budding  extracellular exosome  multivesicular body sorting pathway  regulation of mitotic spindle assembly  ESCRT III complex disassembly  
Ontology : EGO-EBIcell separation after cytokinesis  regulation of receptor recycling  protein binding  nucleus  cytosol  cytosol  nucleus organization  lysosome organization  mitotic metaphase plate congression  endosome to lysosome transport  endosome membrane  regulation of centrosome duplication  protein transport  endosomal transport  viral life cycle  multivesicular body assembly  viral budding  extracellular exosome  multivesicular body sorting pathway  regulation of mitotic spindle assembly  ESCRT III complex disassembly  
Pathways : KEGGEndocytosis   
NDEx NetworkCHMP5
Atlas of Cancer Signalling NetworkCHMP5
Wikipedia pathwaysCHMP5
Orthology - Evolution
OrthoDB51510
GeneTree (enSembl)ENSG00000086065
Phylogenetic Trees/Animal Genes : TreeFamCHMP5
HOVERGENQ9NZZ3
HOGENOMQ9NZZ3
Homologs : HomoloGeneCHMP5
Homology/Alignments : Family Browser (UCSC)CHMP5
Gene fusions - Rearrangements
Fusion : MitelmanCHMP5/VMP1 [9p13.3/17q23.1]  
Fusion: TCGACHMP5 9p13.3 VMP1 17q23.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHMP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHMP5
dbVarCHMP5
ClinVarCHMP5
1000_GenomesCHMP5 
Exome Variant ServerCHMP5
ExAC (Exome Aggregation Consortium)CHMP5 (select the gene name)
Genetic variants : HAPMAP51510
Genomic Variants (DGV)CHMP5 [DGVbeta]
DECIPHER (Syndromes)9:33264877-33282067  ENSG00000086065
CONAN: Copy Number AnalysisCHMP5 
Mutations
ICGC Data PortalCHMP5 
TCGA Data PortalCHMP5 
Broad Tumor PortalCHMP5
OASIS PortalCHMP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHMP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHMP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHMP5
DgiDB (Drug Gene Interaction Database)CHMP5
DoCM (Curated mutations)CHMP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHMP5 (select a term)
intoGenCHMP5
Cancer3DCHMP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610900   
Orphanet
MedgenCHMP5
Genetic Testing Registry CHMP5
NextProtQ9NZZ3 [Medical]
TSGene51510
GENETestsCHMP5
Huge Navigator CHMP5 [HugePedia]
snp3D : Map Gene to Disease51510
BioCentury BCIQCHMP5
ClinGenCHMP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51510
Chemical/Pharm GKB GenePA134903143
Clinical trialCHMP5
Miscellaneous
canSAR (ICR)CHMP5 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHMP5
EVEXCHMP5
GoPubMedCHMP5
iHOPCHMP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:28 CEST 2017

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