Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CHODL (chondrolectin)

Identity

Alias_namesC21orf68
chromosome 21 open reading frame 68
Alias_symbol (synonym)FLJ12627
PRED12
MT75
Other alias
HGNC (Hugo) CHODL
LocusID (NCBI) 140578
Atlas_Id 52746
Location 21q21.1  [Link to chromosome band 21q21]
Location_base_pair Starts at 18245875 and ends at 18267371 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KIAA1109 (4q27) / CHODL (21q21.1)SMCO4 (11q21) / CHODL (21q21.1)KIAA1109 4q27 / CHODL 21q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHODL   17807
Cards
Entrez_Gene (NCBI)CHODL  140578  chondrolectin
AliasesC21orf68; MT75; PRED12
GeneCards (Weizmann)CHODL
Ensembl hg19 (Hinxton)ENSG00000154645 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154645 [Gene_View]  chr21:18245875-18267371 [Contig_View]  CHODL [Vega]
ICGC DataPortalENSG00000154645
TCGA cBioPortalCHODL
AceView (NCBI)CHODL
Genatlas (Paris)CHODL
WikiGenes140578
SOURCE (Princeton)CHODL
Genetics Home Reference (NIH)CHODL
Genomic and cartography
GoldenPath hg38 (UCSC)CHODL  -     chr21:18245875-18267371 +  21q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHODL  -     21q21.1   [Description]    (hg19-Feb_2009)
EnsemblCHODL - 21q21.1 [CytoView hg19]  CHODL - 21q21.1 [CytoView hg38]
Mapping of homologs : NCBICHODL [Mapview hg19]  CHODL [Mapview hg38]
OMIM607247   
Gene and transcription
Genbank (Entrez)AF257472 AF523313 AF523314 AF523315 AK022689
RefSeq transcript (Entrez)NM_001204174 NM_001204175 NM_001204176 NM_001204177 NM_001204178 NM_024944
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHODL
Cluster EST : UnigeneHs.283725 [ NCBI ]
CGAP (NCI)Hs.283725
Alternative Splicing GalleryENSG00000154645
Gene ExpressionCHODL [ NCBI-GEO ]   CHODL [ EBI - ARRAY_EXPRESS ]   CHODL [ SEEK ]   CHODL [ MEM ]
Gene Expression Viewer (FireBrowse)CHODL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140578
GTEX Portal (Tissue expression)CHODL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9P2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9P2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9P2
Splice isoforms : SwissVarQ9H9P2
PhosPhoSitePlusQ9H9P2
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CHODL
DMDM Disease mutations140578
Blocks (Seattle)CHODL
SuperfamilyQ9H9P2
Human Protein AtlasENSG00000154645
Peptide AtlasQ9H9P2
HPRD06261
IPIIPI00017202   IPI00718895   IPI00413767   IPI00980757   IPI00917306   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9P2
IntAct (EBI)Q9H9P2
FunCoupENSG00000154645
BioGRIDCHODL
STRING (EMBL)CHODL
ZODIACCHODL
Ontologies - Pathways
QuickGOQ9H9P2
Ontology : AmiGOhyaluronic acid binding  cytoplasm  muscle organ development  regulation of neuron projection development  integral component of membrane  carbohydrate binding  perinuclear region of cytoplasm  
Ontology : EGO-EBIhyaluronic acid binding  cytoplasm  muscle organ development  regulation of neuron projection development  integral component of membrane  carbohydrate binding  perinuclear region of cytoplasm  
NDEx NetworkCHODL
Atlas of Cancer Signalling NetworkCHODL
Wikipedia pathwaysCHODL
Orthology - Evolution
OrthoDB140578
GeneTree (enSembl)ENSG00000154645
Phylogenetic Trees/Animal Genes : TreeFamCHODL
HOVERGENQ9H9P2
HOGENOMQ9H9P2
Homologs : HomoloGeneCHODL
Homology/Alignments : Family Browser (UCSC)CHODL
Gene fusions - Rearrangements
Fusion : MitelmanKIAA1109/CHODL [4q27/21q21.1]  [t(4;21)(q27;q21)]  
Fusion: TCGAKIAA1109 4q27 CHODL 21q21.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHODL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHODL
dbVarCHODL
ClinVarCHODL
1000_GenomesCHODL 
Exome Variant ServerCHODL
ExAC (Exome Aggregation Consortium)CHODL (select the gene name)
Genetic variants : HAPMAP140578
Genomic Variants (DGV)CHODL [DGVbeta]
DECIPHERCHODL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHODL 
Mutations
ICGC Data PortalCHODL 
TCGA Data PortalCHODL 
Broad Tumor PortalCHODL
OASIS PortalCHODL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHODL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHODL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHODL
DgiDB (Drug Gene Interaction Database)CHODL
DoCM (Curated mutations)CHODL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHODL (select a term)
intoGenCHODL
Cancer3DCHODL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607247   
Orphanet
MedgenCHODL
Genetic Testing Registry CHODL
NextProtQ9H9P2 [Medical]
TSGene140578
GENETestsCHODL
Target ValidationCHODL
Huge Navigator CHODL [HugePedia]
snp3D : Map Gene to Disease140578
BioCentury BCIQCHODL
ClinGenCHODL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140578
Chemical/Pharm GKB GenePA26475
Clinical trialCHODL
Miscellaneous
canSAR (ICR)CHODL (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHODL
EVEXCHODL
GoPubMedCHODL
iHOPCHODL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:28:19 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.