Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CHODL (chondrolectin)

Identity

Alias (NCBI)C21orf68
MT75
PRED12
HGNC (Hugo) CHODL
HGNC Alias symbFLJ12627
PRED12
MT75
HGNC Previous nameC21orf68
HGNC Previous namechromosome 21 open reading frame 68
LocusID (NCBI) 140578
Atlas_Id 52746
Location 21q21.1  [Link to chromosome band 21q21]
Location_base_pair Starts at 18244833 and ends at 18267370 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIAA1109 (4q27) / CHODL (21q21.1)SMCO4 (11q21) / CHODL (21q21.1)KIAA1109 4q27 / CHODL 21q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CHODL   17807
Cards
Entrez_Gene (NCBI)CHODL    chondrolectin
AliasesC21orf68; MT75; PRED12
GeneCards (Weizmann)CHODL
Ensembl hg19 (Hinxton)ENSG00000154645 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154645 [Gene_View]  ENSG00000154645 [Sequence]  chr21:18244833-18267370 [Contig_View]  CHODL [Vega]
ICGC DataPortalENSG00000154645
TCGA cBioPortalCHODL
AceView (NCBI)CHODL
Genatlas (Paris)CHODL
SOURCE (Princeton)CHODL
Genetics Home Reference (NIH)CHODL
Genomic and cartography
GoldenPath hg38 (UCSC)CHODL  -     chr21:18244833-18267370 +  21q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHODL  -     21q21.1   [Description]    (hg19-Feb_2009)
GoldenPathCHODL - 21q21.1 [CytoView hg19]  CHODL - 21q21.1 [CytoView hg38]
ImmunoBaseENSG00000154645
Genome Data Viewer NCBICHODL [Mapview hg19]  
OMIM607247   
Gene and transcription
Genbank (Entrez)AF257472 AF523313 AF523314 AF523315 AK022689
RefSeq transcript (Entrez)NM_001204174 NM_001204175 NM_001204176 NM_001204177 NM_001204178 NM_024944
Consensus coding sequences : CCDS (NCBI)CHODL
Gene ExpressionCHODL [ NCBI-GEO ]   CHODL [ EBI - ARRAY_EXPRESS ]   CHODL [ SEEK ]   CHODL [ MEM ]
Gene Expression Viewer (FireBrowse)CHODL [ Firebrowse - Broad ]
GenevisibleExpression of CHODL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140578
GTEX Portal (Tissue expression)CHODL
Human Protein AtlasENSG00000154645-CHODL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9P2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9P2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9P2
PhosPhoSitePlusQ9H9P2
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link_sf    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CHODL
SuperfamilyQ9H9P2
AlphaFold pdb e-kbQ9H9P2   
Human Protein Atlas [tissue]ENSG00000154645-CHODL [tissue]
HPRD06261
Protein Interaction databases
DIP (DOE-UCLA)Q9H9P2
IntAct (EBI)Q9H9P2
BioGRIDCHODL
STRING (EMBL)CHODL
ZODIACCHODL
Ontologies - Pathways
QuickGOQ9H9P2
Ontology : AmiGOprotein binding  hyaluronic acid binding  cytoplasm  cytoplasm  endoplasmic reticulum membrane  centrosome  cytosol  muscle organ development  integral component of membrane  carbohydrate binding  perinuclear region of cytoplasm  positive regulation of axonogenesis  
Ontology : EGO-EBIprotein binding  hyaluronic acid binding  cytoplasm  cytoplasm  endoplasmic reticulum membrane  centrosome  cytosol  muscle organ development  integral component of membrane  carbohydrate binding  perinuclear region of cytoplasm  positive regulation of axonogenesis  
NDEx NetworkCHODL
Atlas of Cancer Signalling NetworkCHODL
Wikipedia pathwaysCHODL
Orthology - Evolution
OrthoDB140578
GeneTree (enSembl)ENSG00000154645
Phylogenetic Trees/Animal Genes : TreeFamCHODL
Homologs : HomoloGeneCHODL
Homology/Alignments : Family Browser (UCSC)CHODL
Gene fusions - Rearrangements
Fusion : MitelmanKIAA1109/CHODL [4q27/21q21.1]  
Fusion : QuiverCHODL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHODL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHODL
dbVarCHODL
ClinVarCHODL
MonarchCHODL
1000_GenomesCHODL 
Exome Variant ServerCHODL
GNOMAD BrowserENSG00000154645
Varsome BrowserCHODL
ACMGCHODL variants
VarityQ9H9P2
Genomic Variants (DGV)CHODL [DGVbeta]
DECIPHERCHODL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHODL 
Mutations
ICGC Data PortalCHODL 
TCGA Data PortalCHODL 
Broad Tumor PortalCHODL
OASIS PortalCHODL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHODL  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCHODL
Mutations and Diseases : HGMDCHODL
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCHODL
DgiDB (Drug Gene Interaction Database)CHODL
DoCM (Curated mutations)CHODL
CIViC (Clinical Interpretations of Variants in Cancer)CHODL
Cancer3DCHODL
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607247   
Orphanet
DisGeNETCHODL
MedgenCHODL
Genetic Testing Registry CHODL
NextProtQ9H9P2 [Medical]
GENETestsCHODL
Target ValidationCHODL
Huge Navigator CHODL [HugePedia]
ClinGenCHODL
Clinical trials, drugs, therapy
MyCancerGenomeCHODL
Protein Interactions : CTDCHODL
Pharm GKB GenePA26475
PharosQ9H9P2
Clinical trialCHODL
Miscellaneous
canSAR (ICR)CHODL
HarmonizomeCHODL
DataMed IndexCHODL
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCHODL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:03:54 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.