Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CMTM8 (CKLF like MARVEL transmembrane domain containing 8)

Identity

Alias_namesCKLFSF8
chemokine-like factor super family 8
chemokine-like factor superfamily 8
CKLF-like MARVEL transmembrane domain containing 8
Other aliasCKLFSF8-V2
HGNC (Hugo) CMTM8
LocusID (NCBI) 152189
Atlas_Id 50887
Location 3p22.3  [Link to chromosome band 3p22]
Location_base_pair Starts at 32280171 and ends at 32411817 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CMTM8 (3p22.3) / NR1D2 (3p24.2)CMTM8 (3p22.3) / RAF1 (3p25.2)CMTM8 3p22.3 / NR1D2 3p24.2
CMTM8 3p22.3 / RAF1 3p25.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMTM8   19179
Cards
Entrez_Gene (NCBI)CMTM8  152189  CKLF like MARVEL transmembrane domain containing 8
AliasesCKLFSF8; CKLFSF8-V2
GeneCards (Weizmann)CMTM8
Ensembl hg19 (Hinxton)ENSG00000170293 [Gene_View]  chr3:32280171-32411817 [Contig_View]  CMTM8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170293 [Gene_View]  chr3:32280171-32411817 [Contig_View]  CMTM8 [Vega]
ICGC DataPortalENSG00000170293
TCGA cBioPortalCMTM8
AceView (NCBI)CMTM8
Genatlas (Paris)CMTM8
WikiGenes152189
SOURCE (Princeton)CMTM8
Genetics Home Reference (NIH)CMTM8
Genomic and cartography
GoldenPath hg19 (UCSC)CMTM8  -     chr3:32280171-32411817 +  3p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CMTM8  -     3p22.3   [Description]    (hg38-Dec_2013)
EnsemblCMTM8 - 3p22.3 [CytoView hg19]  CMTM8 - 3p22.3 [CytoView hg38]
Mapping of homologs : NCBICMTM8 [Mapview hg19]  CMTM8 [Mapview hg38]
OMIM607891   
Gene and transcription
Genbank (Entrez)AF474370 AY598783 BC041390 CB070190 HQ448033
RefSeq transcript (Entrez)NM_001320308 NM_178868
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)CMTM8
Cluster EST : UnigeneHs.154986 [ NCBI ]
CGAP (NCI)Hs.154986
Alternative Splicing GalleryENSG00000170293
Gene ExpressionCMTM8 [ NCBI-GEO ]   CMTM8 [ EBI - ARRAY_EXPRESS ]   CMTM8 [ SEEK ]   CMTM8 [ MEM ]
Gene Expression Viewer (FireBrowse)CMTM8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152189
GTEX Portal (Tissue expression)CMTM8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZV2
Splice isoforms : SwissVarQ8IZV2
PhosPhoSitePlusQ8IZV2
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)MAL    Marvel   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)CMTM8
DMDM Disease mutations152189
Blocks (Seattle)CMTM8
SuperfamilyQ8IZV2
Human Protein AtlasENSG00000170293
Peptide AtlasQ8IZV2
HPRD06989
IPIIPI00293878   IPI00848049   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZV2
IntAct (EBI)Q8IZV2
FunCoupENSG00000170293
BioGRIDCMTM8
STRING (EMBL)CMTM8
ZODIACCMTM8
Ontologies - Pathways
QuickGOQ8IZV2
Ontology : AmiGOcytokine activity  extracellular space  nucleoplasm  cytoplasm  chemotaxis  integral component of membrane  
Ontology : EGO-EBIcytokine activity  extracellular space  nucleoplasm  cytoplasm  chemotaxis  integral component of membrane  
NDEx NetworkCMTM8
Atlas of Cancer Signalling NetworkCMTM8
Wikipedia pathwaysCMTM8
Orthology - Evolution
OrthoDB152189
GeneTree (enSembl)ENSG00000170293
Phylogenetic Trees/Animal Genes : TreeFamCMTM8
HOVERGENQ8IZV2
HOGENOMQ8IZV2
Homologs : HomoloGeneCMTM8
Homology/Alignments : Family Browser (UCSC)CMTM8
Gene fusions - Rearrangements
Fusion : MitelmanCMTM8/NR1D2 [3p22.3/3p24.2]  
Fusion : MitelmanCMTM8/RAF1 [3p22.3/3p25.2]  [t(3;3)(p22;p25)]  
Fusion: TCGACMTM8 3p22.3 NR1D2 3p24.2 BRCA
Fusion: TCGACMTM8 3p22.3 RAF1 3p25.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMTM8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMTM8
dbVarCMTM8
ClinVarCMTM8
1000_GenomesCMTM8 
Exome Variant ServerCMTM8
ExAC (Exome Aggregation Consortium)CMTM8 (select the gene name)
Genetic variants : HAPMAP152189
Genomic Variants (DGV)CMTM8 [DGVbeta]
DECIPHER (Syndromes)3:32280171-32411817  ENSG00000170293
CONAN: Copy Number AnalysisCMTM8 
Mutations
ICGC Data PortalCMTM8 
TCGA Data PortalCMTM8 
Broad Tumor PortalCMTM8
OASIS PortalCMTM8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMTM8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMTM8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMTM8
DgiDB (Drug Gene Interaction Database)CMTM8
DoCM (Curated mutations)CMTM8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMTM8 (select a term)
intoGenCMTM8
Cancer3DCMTM8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607891   
Orphanet
MedgenCMTM8
Genetic Testing Registry CMTM8
NextProtQ8IZV2 [Medical]
TSGene152189
GENETestsCMTM8
Huge Navigator CMTM8 [HugePedia]
snp3D : Map Gene to Disease152189
BioCentury BCIQCMTM8
ClinGenCMTM8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152189
Chemical/Pharm GKB GenePA38818
Clinical trialCMTM8
Miscellaneous
canSAR (ICR)CMTM8 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMTM8
EVEXCMTM8
GoPubMedCMTM8
iHOPCMTM8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:01:00 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.