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CNP (2',3'-cyclic nucleotide 3' phosphodiesterase)

Identity

Other aliasCNP1
HGNC (Hugo) CNP
LocusID (NCBI) 1267
Atlas_Id 47306
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41967718 and ends at 41977740 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADCY2 (5p15.31) / CNP (17q21.2)CNP (17q21.2) / NCALD (8q22.3)CNP (17q21.2) / NIPAL3 (1p36.11)
CNP (17q21.2) / TMEM63A (1q42.12)SMARCA1 (Xq25) / CNP (17q21.2)SRCAP (16p11.2) / CNP (17q21.2)
CNP 17q21.2 / NCALD 8q22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNP   2158
Cards
Entrez_Gene (NCBI)CNP  1267  2',3'-cyclic nucleotide 3' phosphodiesterase
AliasesCNP1
GeneCards (Weizmann)CNP
Ensembl hg19 (Hinxton)ENSG00000173786 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173786 [Gene_View]  chr17:41967718-41977740 [Contig_View]  CNP [Vega]
ICGC DataPortalENSG00000173786
TCGA cBioPortalCNP
AceView (NCBI)CNP
Genatlas (Paris)CNP
WikiGenes1267
SOURCE (Princeton)CNP
Genetics Home Reference (NIH)CNP
Genomic and cartography
GoldenPath hg38 (UCSC)CNP  -     chr17:41967718-41977740 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNP  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblCNP - 17q21.2 [CytoView hg19]  CNP - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBICNP [Mapview hg19]  CNP [Mapview hg38]
OMIM123830   
Gene and transcription
Genbank (Entrez)AK026876 AK097833 AK098048 AK098384 AK124861
RefSeq transcript (Entrez)NM_001330216 NM_033133
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNP
Cluster EST : UnigeneHs.273621 [ NCBI ]
CGAP (NCI)Hs.273621
Alternative Splicing GalleryENSG00000173786
Gene ExpressionCNP [ NCBI-GEO ]   CNP [ EBI - ARRAY_EXPRESS ]   CNP [ SEEK ]   CNP [ MEM ]
Gene Expression Viewer (FireBrowse)CNP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1267
GTEX Portal (Tissue expression)CNP
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09543   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09543  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09543
Splice isoforms : SwissVarP09543
Catalytic activity : Enzyme3.1.4.37 [ Enzyme-Expasy ]   3.1.4.373.1.4.37 [ IntEnz-EBI ]   3.1.4.37 [ BRENDA ]   3.1.4.37 [ KEGG ]   
PhosPhoSitePlusP09543
Domains : Interpro (EBI)CNPase    cNuc_Pdiesterase    P-loop_NTPase   
Domain families : Pfam (Sanger)CNPase (PF05881)   
Domain families : Pfam (NCBI)pfam05881   
Conserved Domain (NCBI)CNP
DMDM Disease mutations1267
Blocks (Seattle)CNP
PDB (SRS)1WOJ   
PDB (PDBSum)1WOJ   
PDB (IMB)1WOJ   
PDB (RSDB)1WOJ   
Structural Biology KnowledgeBase1WOJ   
SCOP (Structural Classification of Proteins)1WOJ   
CATH (Classification of proteins structures)1WOJ   
SuperfamilyP09543
Human Protein AtlasENSG00000173786
Peptide AtlasP09543
HPRD00448
IPIIPI00306667   IPI00220993   IPI00979319   IPI00795036   
Protein Interaction databases
DIP (DOE-UCLA)P09543
IntAct (EBI)P09543
FunCoupENSG00000173786
BioGRIDCNP
STRING (EMBL)CNP
ZODIACCNP
Ontologies - Pathways
QuickGOP09543
Ontology : AmiGOmicrotubule cytoskeleton organization  RNA binding  2',3'-cyclic-nucleotide 3'-phosphodiesterase activity  extracellular space  cytoplasm  mitochondrial outer membrane  mitochondrial inner membrane  plasma membrane  microvillus  chemical synaptic transmission  axonogenesis  aging  adult locomotory behavior  cyclic nucleotide catabolic process  response to toxic substance  membrane  substantia nigra development  cyclic nucleotide binding  forebrain development  pseudopodium  response to lipopolysaccharide  myelin sheath abaxonal region  myelin sheath adaxonal region  melanosome  regulation of mitochondrial membrane permeability  perinuclear region of cytoplasm  oligodendrocyte differentiation  extracellular exosome  
Ontology : EGO-EBImicrotubule cytoskeleton organization  RNA binding  2',3'-cyclic-nucleotide 3'-phosphodiesterase activity  extracellular space  cytoplasm  mitochondrial outer membrane  mitochondrial inner membrane  plasma membrane  microvillus  chemical synaptic transmission  axonogenesis  aging  adult locomotory behavior  cyclic nucleotide catabolic process  response to toxic substance  membrane  substantia nigra development  cyclic nucleotide binding  forebrain development  pseudopodium  response to lipopolysaccharide  myelin sheath abaxonal region  myelin sheath adaxonal region  melanosome  regulation of mitochondrial membrane permeability  perinuclear region of cytoplasm  oligodendrocyte differentiation  extracellular exosome  
NDEx NetworkCNP
Atlas of Cancer Signalling NetworkCNP
Wikipedia pathwaysCNP
Orthology - Evolution
OrthoDB1267
GeneTree (enSembl)ENSG00000173786
Phylogenetic Trees/Animal Genes : TreeFamCNP
HOVERGENP09543
HOGENOMP09543
Homologs : HomoloGeneCNP
Homology/Alignments : Family Browser (UCSC)CNP
Gene fusions - Rearrangements
Fusion : MitelmanCNP/NCALD [17q21.2/8q22.3]  
Fusion: TCGACNP 17q21.2 NCALD 8q22.3 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNP
dbVarCNP
ClinVarCNP
1000_GenomesCNP 
Exome Variant ServerCNP
ExAC (Exome Aggregation Consortium)CNP (select the gene name)
Genetic variants : HAPMAP1267
Genomic Variants (DGV)CNP [DGVbeta]
DECIPHERCNP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNP 
Mutations
ICGC Data PortalCNP 
TCGA Data PortalCNP 
Broad Tumor PortalCNP
OASIS PortalCNP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNP
DgiDB (Drug Gene Interaction Database)CNP
DoCM (Curated mutations)CNP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNP (select a term)
intoGenCNP
Cancer3DCNP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123830   
Orphanet
MedgenCNP
Genetic Testing Registry CNP
NextProtP09543 [Medical]
TSGene1267
GENETestsCNP
Huge Navigator CNP [HugePedia]
snp3D : Map Gene to Disease1267
BioCentury BCIQCNP
ClinGenCNP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1267
Chemical/Pharm GKB GenePA26680
Clinical trialCNP
Miscellaneous
canSAR (ICR)CNP (select the gene name)
Probes
Litterature
PubMed74 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNP
EVEXCNP
GoPubMedCNP
iHOPCNP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:11:11 CEST 2017

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