Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CNR1 (cannabinoid receptor 1 (brain))

Identity

Other namesCANN6
CB-R
CB1
CB1A
CB1K5
CB1R
CNR
HGNC (Hugo) CNR1
LocusID (NCBI) 1268
Atlas_Id 45964
Location 6q15
Location_base_pair Starts at 88849585 and ends at 88875767 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNR1   2159
Cards
Entrez_Gene (NCBI)CNR1  1268  cannabinoid receptor 1 (brain)
GeneCards (Weizmann)CNR1
Ensembl hg19 (Hinxton)ENSG00000118432 [Gene_View]  chr6:88849585-88875767 [Contig_View]  CNR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000118432 [Gene_View]  chr6:88849585-88875767 [Contig_View]  CNR1 [Vega]
ICGC DataPortalENSG00000118432
TCGA cBioPortalCNR1
AceView (NCBI)CNR1
Genatlas (Paris)CNR1
WikiGenes1268
SOURCE (Princeton)CNR1
Genomic and cartography
GoldenPath hg19 (UCSC)CNR1  -     chr6:88849585-88875767 -  6q15   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CNR1  -     6q15   [Description]    (hg38-Dec_2013)
EnsemblCNR1 - 6q15 [CytoView hg19]  CNR1 - 6q15 [CytoView hg38]
Mapping of homologs : NCBICNR1 [Mapview hg19]  CNR1 [Mapview hg38]
OMIM114610   
Gene and transcription
Genbank (Entrez)AF107262 AK313908 AY766182 AY995204 BC074811
RefSeq transcript (Entrez)NM_001160226 NM_001160258 NM_001160259 NM_001160260 NM_016083 NM_033181
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_025741 NW_004929327
Consensus coding sequences : CCDS (NCBI)CNR1
Cluster EST : UnigeneHs.75110 [ NCBI ]
CGAP (NCI)Hs.75110
Alternative Splicing : Fast-db (Paris)GSHG0033446
Alternative Splicing GalleryENSG00000118432
Gene ExpressionCNR1 [ NCBI-GEO ]     CNR1 [ SEEK ]   CNR1 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)1268
Protein : pattern, domain, 3D structure
UniProt/SwissProtP21554 (Uniprot)
NextProtP21554  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP21554
Splice isoforms : SwissVarP21554 (Swissvar)
PhosPhoSitePlusP21554
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)Canbinoid_rcpt_1    Cnbnoid_rcpt    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations1268
Blocks (Seattle)CNR1
PDB (SRS)1LVQ    1LVR    2B0Y    2KOE   
PDB (PDBSum)1LVQ    1LVR    2B0Y    2KOE   
PDB (IMB)1LVQ    1LVR    2B0Y    2KOE   
PDB (RSDB)1LVQ    1LVR    2B0Y    2KOE   
Structural Biology KnowledgeBase1LVQ    1LVR    2B0Y    2KOE   
SCOP (Structural Classification of Proteins)1LVQ    1LVR    2B0Y    2KOE   
CATH (Classification of proteins structures)1LVQ    1LVR    2B0Y    2KOE   
Human Protein AtlasENSG00000118432
Peptide AtlasP21554
HPRD00259
IPIIPI00009396   IPI00215993   IPI00655874   IPI01018356   IPI00985031   
Protein Interaction databases
DIP (DOE-UCLA)P21554
IntAct (EBI)P21554
FunCoupENSG00000118432
BioGRIDCNR1
IntegromeDBCNR1
STRING (EMBL)CNR1
ZODIACCNR1
Ontologies - Pathways
QuickGOP21554
Ontology : AmiGOpositive regulation of acute inflammatory response to antigenic stimulus  cannabinoid receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  spermatogenesis  axonal fasciculation  aging  response to nutrient  memory  drug binding  positive regulation of neuron projection development  sensory perception of pain  axon  growth cone  positive regulation of fever generation  negative regulation of fatty acid beta-oxidation  regulation of synaptic transmission, GABAergic  response to lipopolysaccharide  negative regulation of mast cell activation  negative regulation of dopamine secretion  response to nicotine  cannabinoid signaling pathway  cannabinoid signaling pathway  cannabinoid signaling pathway  response to cocaine  glucose homeostasis  positive regulation of apoptotic process  intracellular membrane-bounded organelle  response to morphine  membrane raft  response to ethanol  negative regulation of action potential  negative regulation of blood pressure  positive regulation of blood pressure  regulation of insulin secretion  negative regulation of nitric-oxide synthase activity  regulation of synaptic transmission, glutamatergic  maternal process involved in female pregnancy  regulation of feeding behavior  regulation of penile erection  
Ontology : EGO-EBIpositive regulation of acute inflammatory response to antigenic stimulus  cannabinoid receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  spermatogenesis  axonal fasciculation  aging  response to nutrient  memory  drug binding  positive regulation of neuron projection development  sensory perception of pain  axon  growth cone  positive regulation of fever generation  negative regulation of fatty acid beta-oxidation  regulation of synaptic transmission, GABAergic  response to lipopolysaccharide  negative regulation of mast cell activation  negative regulation of dopamine secretion  response to nicotine  cannabinoid signaling pathway  cannabinoid signaling pathway  cannabinoid signaling pathway  response to cocaine  glucose homeostasis  positive regulation of apoptotic process  intracellular membrane-bounded organelle  response to morphine  membrane raft  response to ethanol  negative regulation of action potential  negative regulation of blood pressure  positive regulation of blood pressure  regulation of insulin secretion  negative regulation of nitric-oxide synthase activity  regulation of synaptic transmission, glutamatergic  maternal process involved in female pregnancy  regulation of feeding behavior  regulation of penile erection  
Pathways : BIOCARTAMetabolism of Anandamide, an Endogenous Cannabinoid [Genes]   
Pathways : KEGGRap1 signaling pathway    Neuroactive ligand-receptor interaction    Retrograde endocannabinoid signaling   
Protein Interaction DatabaseCNR1
Atlas of Cancer Signalling NetworkCNR1
Wikipedia pathwaysCNR1
Orthology - Evolution
OrthoDB1268
GeneTree (enSembl)ENSG00000118432
Phylogenetic Trees/Animal Genes : TreeFamCNR1
Homologs : HomoloGeneCNR1
Homology/Alignments : Family Browser (UCSC)CNR1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCNR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNR1
dbVarCNR1
ClinVarCNR1
1000_GenomesCNR1 
Exome Variant ServerCNR1
Exome Aggregation Consortium (ExAC)ENSG00000118432
SNP (GeneSNP Utah)CNR1
SNP : HGBaseCNR1
Genetic variants : HAPMAPCNR1
Genomic Variants (DGV)CNR1 [DGVbeta]
Mutations
ICGC Data PortalCNR1 
TCGA Data PortalCNR1 
Tumor PortalCNR1
TCGA Copy Number PortalCNR1
Somatic Mutations in Cancer : COSMICCNR1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNR1
DgiDB (Drug Gene Interaction Database)CNR1
DoCM (Curated mutations)CNR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNR1 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)6:88849585-88875767
CONAN: Copy Number AnalysisCNR1 
Mutations and Diseases : HGMDCNR1
OMIM114610   
MedgenCNR1
NextProtP21554 [Medical]
TSGene1268
GENETestsCNR1
Huge Navigator CNR1 [HugePedia]  CNR1 [HugeCancerGEM]
snp3D : Map Gene to Disease1268
BioCentury BCIQCNR1
General knowledge
Chemical/Protein Interactions : CTD1268
Chemical/Pharm GKB GenePA26681
Clinical trialCNR1
Other databases
Probes
Litterature
PubMed374 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNR1
GoPubMedCNR1
iHOPCNR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Jan 16 18:22:35 CET 2016

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