Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

COQ2 (coenzyme Q2, polyprenyltransferase)

Identity

Alias_namescoenzyme Q2 homolog
Alias_symbol (synonym)CL640
FLJ26072
Other aliasCOQ10D1
MSA1
PHB:PPT
HGNC (Hugo) COQ2
LocusID (NCBI) 27235
Atlas_Id 40094
Location 4q21.23  [Link to chromosome band 4q21]
Location_base_pair Starts at 83263824 and ends at 83284914 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COQ2   25223
Cards
Entrez_Gene (NCBI)COQ2  27235  coenzyme Q2, polyprenyltransferase
AliasesCL640; COQ10D1; MSA1; PHB:PPT
GeneCards (Weizmann)COQ2
Ensembl hg19 (Hinxton)ENSG00000173085 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173085 [Gene_View]  chr4:83263824-83284914 [Contig_View]  COQ2 [Vega]
ICGC DataPortalENSG00000173085
TCGA cBioPortalCOQ2
AceView (NCBI)COQ2
Genatlas (Paris)COQ2
WikiGenes27235
SOURCE (Princeton)COQ2
Genetics Home Reference (NIH)COQ2
Genomic and cartography
GoldenPath hg38 (UCSC)COQ2  -     chr4:83263824-83284914 -  4q21.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COQ2  -     4q21.23   [Description]    (hg19-Feb_2009)
EnsemblCOQ2 - 4q21.23 [CytoView hg19]  COQ2 - 4q21.23 [CytoView hg38]
Mapping of homologs : NCBICOQ2 [Mapview hg19]  COQ2 [Mapview hg38]
OMIM146500   607426   609825   
Gene and transcription
Genbank (Entrez)AF091086 AJ621061 AK023076 AK129583 AK300972
RefSeq transcript (Entrez)NM_015697
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COQ2
Cluster EST : UnigeneHs.729069 [ NCBI ]
CGAP (NCI)Hs.729069
Alternative Splicing GalleryENSG00000173085
Gene ExpressionCOQ2 [ NCBI-GEO ]   COQ2 [ EBI - ARRAY_EXPRESS ]   COQ2 [ SEEK ]   COQ2 [ MEM ]
Gene Expression Viewer (FireBrowse)COQ2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27235
GTEX Portal (Tissue expression)COQ2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96H96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96H96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96H96
Splice isoforms : SwissVarQ96H96
PhosPhoSitePlusQ96H96
Domaine pattern : Prosite (Expaxy)UBIA (PS00943)   
Domains : Interpro (EBI)HB_octoprenylTrfase    HB_polyprenyltransferase    UbiA_prenyltransferase    UbiA_prenylTrfase_CS   
Domain families : Pfam (Sanger)UbiA (PF01040)   
Domain families : Pfam (NCBI)pfam01040   
Conserved Domain (NCBI)COQ2
DMDM Disease mutations27235
Blocks (Seattle)COQ2
SuperfamilyQ96H96
Human Protein AtlasENSG00000173085
Peptide AtlasQ96H96
HPRD13062
IPIIPI00739586   IPI00305734   IPI00964733   IPI00973356   IPI00024541   
Protein Interaction databases
DIP (DOE-UCLA)Q96H96
IntAct (EBI)Q96H96
FunCoupENSG00000173085
BioGRIDCOQ2
STRING (EMBL)COQ2
ZODIACCOQ2
Ontologies - Pathways
QuickGOQ96H96
Ontology : AmiGO4-hydroxybenzoate decaprenyltransferase activity  4-hydroxybenzoate decaprenyltransferase activity  mitochondrial inner membrane  glycerol metabolic process  ubiquinone biosynthetic process  ubiquinone biosynthetic process  ubiquinone biosynthetic process  ubiquinone biosynthetic process  isoprenoid biosynthetic process  integral component of mitochondrial inner membrane  4-hydroxybenzoate nonaprenyltransferase activity  
Ontology : EGO-EBI4-hydroxybenzoate decaprenyltransferase activity  4-hydroxybenzoate decaprenyltransferase activity  mitochondrial inner membrane  glycerol metabolic process  ubiquinone biosynthetic process  ubiquinone biosynthetic process  ubiquinone biosynthetic process  ubiquinone biosynthetic process  isoprenoid biosynthetic process  integral component of mitochondrial inner membrane  4-hydroxybenzoate nonaprenyltransferase activity  
Pathways : KEGGUbiquinone and other terpenoid-quinone biosynthesis   
NDEx NetworkCOQ2
Atlas of Cancer Signalling NetworkCOQ2
Wikipedia pathwaysCOQ2
Orthology - Evolution
OrthoDB27235
GeneTree (enSembl)ENSG00000173085
Phylogenetic Trees/Animal Genes : TreeFamCOQ2
HOVERGENQ96H96
HOGENOMQ96H96
Homologs : HomoloGeneCOQ2
Homology/Alignments : Family Browser (UCSC)COQ2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOQ2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COQ2
dbVarCOQ2
ClinVarCOQ2
1000_GenomesCOQ2 
Exome Variant ServerCOQ2
ExAC (Exome Aggregation Consortium)COQ2 (select the gene name)
Genetic variants : HAPMAP27235
Genomic Variants (DGV)COQ2 [DGVbeta]
DECIPHERCOQ2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOQ2 
Mutations
ICGC Data PortalCOQ2 
TCGA Data PortalCOQ2 
Broad Tumor PortalCOQ2
OASIS PortalCOQ2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOQ2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOQ2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COQ2
DgiDB (Drug Gene Interaction Database)COQ2
DoCM (Curated mutations)COQ2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COQ2 (select a term)
intoGenCOQ2
Cancer3DCOQ2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM146500    607426    609825   
Orphanet19815    19053    13950   
MedgenCOQ2
Genetic Testing Registry COQ2
NextProtQ96H96 [Medical]
TSGene27235
GENETestsCOQ2
Target ValidationCOQ2
Huge Navigator COQ2 [HugePedia]
snp3D : Map Gene to Disease27235
BioCentury BCIQCOQ2
ClinGenCOQ2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27235
Chemical/Pharm GKB GenePA142672084
Clinical trialCOQ2
Miscellaneous
canSAR (ICR)COQ2 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOQ2
EVEXCOQ2
GoPubMedCOQ2
iHOPCOQ2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:58:25 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.