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CRABP2 (cellular retinoic acid binding protein 2)

Identity

Alias_namescellular retinoic acid-binding protein 2
Alias_symbol (synonym)CRABP-II
Other aliasRBP6
HGNC (Hugo) CRABP2
LocusID (NCBI) 1382
Atlas_Id 46427
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 156699608 and ends at 156705816 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRABP2   2339
Cards
Entrez_Gene (NCBI)CRABP2  1382  cellular retinoic acid binding protein 2
AliasesCRABP-II; RBP6
GeneCards (Weizmann)CRABP2
Ensembl hg19 (Hinxton)ENSG00000143320 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143320 [Gene_View]  chr1:156699608-156705816 [Contig_View]  CRABP2 [Vega]
ICGC DataPortalENSG00000143320
TCGA cBioPortalCRABP2
AceView (NCBI)CRABP2
Genatlas (Paris)CRABP2
WikiGenes1382
SOURCE (Princeton)CRABP2
Genetics Home Reference (NIH)CRABP2
Genomic and cartography
GoldenPath hg38 (UCSC)CRABP2  -     chr1:156699608-156705816 -  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRABP2  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblCRABP2 - 1q23.1 [CytoView hg19]  CRABP2 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBICRABP2 [Mapview hg19]  CRABP2 [Mapview hg38]
OMIM180231   
Gene and transcription
Genbank (Entrez)AB593017 AK312007 AU126559 BC001109 BP231157
RefSeq transcript (Entrez)NM_001199723 NM_001878
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRABP2
Cluster EST : UnigeneHs.405662 [ NCBI ]
CGAP (NCI)Hs.405662
Alternative Splicing GalleryENSG00000143320
Gene ExpressionCRABP2 [ NCBI-GEO ]   CRABP2 [ EBI - ARRAY_EXPRESS ]   CRABP2 [ SEEK ]   CRABP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CRABP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1382
GTEX Portal (Tissue expression)CRABP2
Human Protein AtlasENSG00000143320-CRABP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP29373   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP29373  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP29373
Splice isoforms : SwissVarP29373
PhosPhoSitePlusP29373
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    Calycin-like    CRABP2    Fatty_acid-bd    iLBP    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI),TD WIDTH=15%>CRABP2
DMDM Disease mutations1382
Blocks (Seattle)CRABP2
PDB (SRS)###############################################################################################################################################################################################################################################################   
PDB (PDBSum)###############################################################################################################################################################################################################################################################   
PDB (IMB)###############################################################################################################################################################################################################################################################   
PDB (RSDB)###############################################################################################################################################################################################################################################################   
Structural Biology KnowledgeBase###############################################################################################################################################################################################################################################################   
SCOP (Structural Classification of Proteins)###############################################################################################################################################################################################################################################################   
CATH (Classification of proteins structures)###############################################################################################################################################################################################################################################################   
SuperfamilyP29373
Human Protein Atlas [tissue]ENSG00000143320-CRABP2 [tissue]
Peptide AtlasP29373
HPRD08353
IPIIPI00216088   IPI00643056   
Protein Interaction databases
DIP (DOE-UCLA)P29373
IntAct (EBI)P29373
FunCoupENSG00000143320
BioGRIDCRABP2
STRING (EMBL)CRABP2
ZODIACCRABP2
Ontologies - Pathways
QuickGOP29373
Ontology : AmiGOretinoic acid binding  transporter activity  retinoid binding  protein binding  nucleoplasm  nucleoplasm  endoplasmic reticulum  cytosol  cytosol  regulation of transcription, DNA-templated  transport  signal transduction  epidermis development  retinal binding  retinol binding  embryonic forelimb morphogenesis  retinoic acid metabolic process  regulation of retinoic acid receptor signaling pathway  positive regulation of collateral sprouting  extracellular exosome  
Ontology : EGO-EBIretinoic acid binding  transporter activity  retinoid binding  protein binding  nucleoplasm  nucleoplasm  endoplasmic reticulum  cytosol  cytosol  regulation of transcription, DNA-templated  transport  signal transduction  epidermis development  retinal binding  retinol binding  embryonic forelimb morphogenesis  retinoic acid metabolic process  regulation of retinoic acid receptor signaling pathway  positive regulation of collateral sprouting  extracellular exosome  
NDEx NetworkCRABP2
Atlas of Cancer Signalling NetworkCRABP2
Wikipedia pathwaysCRABP2
Orthology - Evolution
OrthoDB1382
GeneTree (enSembl)ENSG00000143320
Phylogenetic Trees/Animal Genes : TreeFamCRABP2
HOVERGENP29373
HOGENOMP29373
Homologs : HomoloGeneCRABP2
Homology/Alignments : Family Browser (UCSC)CRABP2
Gene fusions - Rearrangements
Tumor Fusion PortalCRABP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRABP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRABP2
dbVarCRABP2
ClinVarCRABP2
1000_GenomesCRABP2 
Exome Variant ServerCRABP2
ExAC (Exome Aggregation Consortium)ENSG00000143320
GNOMAD BrowserENSG00000143320
Genetic variants : HAPMAP1382
Genomic Variants (DGV)CRABP2 [DGVbeta]
DECIPHERCRABP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRABP2 
Mutations
ICGC Data PortalCRABP2 
TCGA Data PortalCRABP2 
Broad Tumor PortalCRABP2
OASIS PortalCRABP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRABP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRABP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRABP2
DgiDB (Drug Gene Interaction Database)CRABP2
DoCM (Curated mutations)CRABP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRABP2 (select a term)
intoGenCRABP2
Cancer3DCRABP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180231   
Orphanet
DisGeNETCRABP2
MedgenCRABP2
Genetic Testing Registry CRABP2
NextProtP29373 [Medical]
TSGene1382
GENETestsCRABP2
Target ValidationCRABP2
Huge Navigator CRABP2 [HugePedia]
snp3D : Map Gene to Disease1382
BioCentury BCIQCRABP2
ClinGenCRABP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1382
Chemical/Pharm GKB GenePA26859
Clinical trialCRABP2
Miscellaneous
canSAR (ICR)CRABP2 (select the gene name)
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRABP2
EVEXCRABP2
GoPubMedCRABP2
iHOPCRABP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:08:54 CET 2017

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