Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CRMP1 (collapsin response mediator protein 1)

Identity

Alias_symbol (synonym)DRP-1
DPYSL1
Other aliasCRMP-1
DRP1
ULIP-3
HGNC (Hugo) CRMP1
LocusID (NCBI) 1400
Atlas_Id 40151
Location 4p16.2  [Link to chromosome band 4p16]
Location_base_pair Starts at 5822491 and ends at 5894810 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EVC (4p16.2) / CRMP1 (4p16.2)HIST1H2BG (6p22.2) / CRMP1 (4p16.2)TBC1D1 (4p14) / CRMP1 (4p16.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRMP1   2365
Cards
Entrez_Gene (NCBI)CRMP1  1400  collapsin response mediator protein 1
AliasesCRMP-1; DPYSL1; DRP-1; DRP1; 
ULIP-3
GeneCards (Weizmann)CRMP1
Ensembl hg19 (Hinxton)ENSG00000072832 [Gene_View]  chr4:5822491-5894810 [Contig_View]  CRMP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000072832 [Gene_View]  chr4:5822491-5894810 [Contig_View]  CRMP1 [Vega]
ICGC DataPortalENSG00000072832
TCGA cBioPortalCRMP1
AceView (NCBI)CRMP1
Genatlas (Paris)CRMP1
WikiGenes1400
SOURCE (Princeton)CRMP1
Genetics Home Reference (NIH)CRMP1
Genomic and cartography
GoldenPath hg19 (UCSC)CRMP1  -     chr4:5822491-5894810 -  4p16.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CRMP1  -     4p16.2   [Description]    (hg38-Dec_2013)
EnsemblCRMP1 - 4p16.2 [CytoView hg19]  CRMP1 - 4p16.2 [CytoView hg38]
Mapping of homologs : NCBICRMP1 [Mapview hg19]  CRMP1 [Mapview hg38]
OMIM602462   
Gene and transcription
Genbank (Entrez)AK091696 AK094725 AK122754 AK127754 AK309379
RefSeq transcript (Entrez)NM_001014809 NM_001288661 NM_001288662 NM_001313
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006051 NW_004929314
Consensus coding sequences : CCDS (NCBI)CRMP1
Cluster EST : UnigeneHs.135270 [ NCBI ]
CGAP (NCI)Hs.135270
Alternative Splicing GalleryENSG00000072832
Gene ExpressionCRMP1 [ NCBI-GEO ]   CRMP1 [ EBI - ARRAY_EXPRESS ]   CRMP1 [ SEEK ]   CRMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1400
GTEX Portal (Tissue expression)CRMP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14194   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14194  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14194
Splice isoforms : SwissVarQ14194
PhosPhoSitePlusQ14194
Domains : Interpro (EBI)Amidohydro-rel    CRMP1    Hydantoinase/dihydroPyrase    Metal-dep_hydrolase_composite    Metal_Hydrolase   
Domain families : Pfam (Sanger)Amidohydro_1 (PF01979)   
Domain families : Pfam (NCBI)pfam01979   
Conserved Domain (NCBI)CRMP1
DMDM Disease mutations1400
Blocks (Seattle)CRMP1
PDB (SRS)4B3Z   
PDB (PDBSum)4B3Z   
PDB (IMB)4B3Z   
PDB (RSDB)4B3Z   
Structural Biology KnowledgeBase4B3Z   
SCOP (Structural Classification of Proteins)4B3Z   
CATH (Classification of proteins structures)4B3Z   
SuperfamilyQ14194
Human Protein AtlasENSG00000072832
Peptide AtlasQ14194
HPRD03913
IPIIPI00414123   IPI00556376   IPI00967583   
Protein Interaction databases
DIP (DOE-UCLA)Q14194
IntAct (EBI)Q14194
FunCoupENSG00000072832
BioGRIDCRMP1
STRING (EMBL)CRMP1
ZODIACCRMP1
Ontologies - Pathways
QuickGOQ14194
Ontology : AmiGOmicrotubule cytoskeleton organization  protein binding  cytoplasm  microtubule organizing center  spindle  cytosol  nucleobase-containing compound metabolic process  nervous system development  axon guidance  negative regulation of neuron projection development  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds  filamin binding  negative regulation of actin filament binding  negative regulation of actin filament binding  
Ontology : EGO-EBImicrotubule cytoskeleton organization  protein binding  cytoplasm  microtubule organizing center  spindle  cytosol  nucleobase-containing compound metabolic process  nervous system development  axon guidance  negative regulation of neuron projection development  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds  filamin binding  negative regulation of actin filament binding  negative regulation of actin filament binding  
NDEx NetworkCRMP1
Atlas of Cancer Signalling NetworkCRMP1
Wikipedia pathwaysCRMP1
Orthology - Evolution
OrthoDB1400
GeneTree (enSembl)ENSG00000072832
Phylogenetic Trees/Animal Genes : TreeFamCRMP1
HOVERGENQ14194
HOGENOMQ14194
Homologs : HomoloGeneCRMP1
Homology/Alignments : Family Browser (UCSC)CRMP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRMP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRMP1
dbVarCRMP1
ClinVarCRMP1
1000_GenomesCRMP1 
Exome Variant ServerCRMP1
ExAC (Exome Aggregation Consortium)CRMP1 (select the gene name)
Genetic variants : HAPMAP1400
Genomic Variants (DGV)CRMP1 [DGVbeta]
DECIPHER (Syndromes)4:5822491-5894810  ENSG00000072832
CONAN: Copy Number AnalysisCRMP1 
Mutations
ICGC Data PortalCRMP1 
TCGA Data PortalCRMP1 
Broad Tumor PortalCRMP1
OASIS PortalCRMP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRMP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRMP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRMP1
DgiDB (Drug Gene Interaction Database)CRMP1
DoCM (Curated mutations)CRMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRMP1 (select a term)
intoGenCRMP1
Cancer3DCRMP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602462   
Orphanet
MedgenCRMP1
Genetic Testing Registry CRMP1
NextProtQ14194 [Medical]
TSGene1400
GENETestsCRMP1
Huge Navigator CRMP1 [HugePedia]
snp3D : Map Gene to Disease1400
BioCentury BCIQCRMP1
ClinGenCRMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1400
Chemical/Pharm GKB GenePA26885
Clinical trialCRMP1
Miscellaneous
canSAR (ICR)CRMP1 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRMP1
EVEXCRMP1
GoPubMedCRMP1
iHOPCRMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:01:47 CET 2017

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