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CTNNAL1 (catenin alpha like 1)

Identity

Alias_namescatenin (cadherin-associated protein), alpha-like 1
catenin alpha-like 1
Alias_symbol (synonym)CLLP
alpha-CATU
Other aliasACRP
HGNC (Hugo) CTNNAL1
LocusID (NCBI) 8727
Atlas_Id 40194
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 111704849 and ends at 111775874 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CTNNAL1 (9q31.3) / ZBTB7C (18q21.1)DAP (5p15.2) / CTNNAL1 (9q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTNNAL1   2512
Cards
Entrez_Gene (NCBI)CTNNAL1  8727  catenin alpha like 1
AliasesACRP; CLLP; alpha-CATU
GeneCards (Weizmann)CTNNAL1
Ensembl hg19 (Hinxton)ENSG00000119326 [Gene_View]  chr9:111704849-111775874 [Contig_View]  CTNNAL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000119326 [Gene_View]  chr9:111704849-111775874 [Contig_View]  CTNNAL1 [Vega]
ICGC DataPortalENSG00000119326
TCGA cBioPortalCTNNAL1
AceView (NCBI)CTNNAL1
Genatlas (Paris)CTNNAL1
WikiGenes8727
SOURCE (Princeton)CTNNAL1
Genetics Home Reference (NIH)CTNNAL1
Genomic and cartography
GoldenPath hg19 (UCSC)CTNNAL1  -     chr9:111704849-111775874 -  9q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTNNAL1  -     9q31.3   [Description]    (hg38-Dec_2013)
EnsemblCTNNAL1 - 9q31.3 [CytoView hg19]  CTNNAL1 - 9q31.3 [CytoView hg38]
Mapping of homologs : NCBICTNNAL1 [Mapview hg19]  CTNNAL1 [Mapview hg38]
OMIM604785   
Gene and transcription
Genbank (Entrez)AB451283 AB451415 AF006070 AF030233 AF080071
RefSeq transcript (Entrez)NM_001286974 NM_003798
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)CTNNAL1
Cluster EST : UnigeneHs.58488 [ NCBI ]
CGAP (NCI)Hs.58488
Alternative Splicing GalleryENSG00000119326
Gene ExpressionCTNNAL1 [ NCBI-GEO ]   CTNNAL1 [ EBI - ARRAY_EXPRESS ]   CTNNAL1 [ SEEK ]   CTNNAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTNNAL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8727
GTEX Portal (Tissue expression)CTNNAL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBT7
Splice isoforms : SwissVarQ9UBT7
PhosPhoSitePlusQ9UBT7
Domains : Interpro (EBI)Alpha_catenin    CTNNAL1    Vinculin/catenin   
Domain families : Pfam (Sanger)Vinculin (PF01044)   
Domain families : Pfam (NCBI)pfam01044   
Conserved Domain (NCBI)CTNNAL1
DMDM Disease mutations8727
Blocks (Seattle)CTNNAL1
SuperfamilyQ9UBT7
Human Protein AtlasENSG00000119326
Peptide AtlasQ9UBT7
HPRD09210
IPIIPI00179328   IPI00549924   IPI00000163   IPI00643624   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBT7
IntAct (EBI)Q9UBT7
FunCoupENSG00000119326
BioGRIDCTNNAL1
STRING (EMBL)CTNNAL1
ZODIACCTNNAL1
Ontologies - Pathways
QuickGOQ9UBT7
Ontology : AmiGOprotein binding  cytosol  cytoskeleton  plasma membrane  cell adhesion  Rho protein signal transduction  cadherin binding  actin filament binding  
Ontology : EGO-EBIprotein binding  cytosol  cytoskeleton  plasma membrane  cell adhesion  Rho protein signal transduction  cadherin binding  actin filament binding  
NDEx NetworkCTNNAL1
Atlas of Cancer Signalling NetworkCTNNAL1
Wikipedia pathwaysCTNNAL1
Orthology - Evolution
OrthoDB8727
GeneTree (enSembl)ENSG00000119326
Phylogenetic Trees/Animal Genes : TreeFamCTNNAL1
HOVERGENQ9UBT7
HOGENOMQ9UBT7
Homologs : HomoloGeneCTNNAL1
Homology/Alignments : Family Browser (UCSC)CTNNAL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTNNAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTNNAL1
dbVarCTNNAL1
ClinVarCTNNAL1
1000_GenomesCTNNAL1 
Exome Variant ServerCTNNAL1
ExAC (Exome Aggregation Consortium)CTNNAL1 (select the gene name)
Genetic variants : HAPMAP8727
Genomic Variants (DGV)CTNNAL1 [DGVbeta]
DECIPHER (Syndromes)9:111704849-111775874  ENSG00000119326
CONAN: Copy Number AnalysisCTNNAL1 
Mutations
ICGC Data PortalCTNNAL1 
TCGA Data PortalCTNNAL1 
Broad Tumor PortalCTNNAL1
OASIS PortalCTNNAL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTNNAL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTNNAL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTNNAL1
DgiDB (Drug Gene Interaction Database)CTNNAL1
DoCM (Curated mutations)CTNNAL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTNNAL1 (select a term)
intoGenCTNNAL1
Cancer3DCTNNAL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604785   
Orphanet
MedgenCTNNAL1
Genetic Testing Registry CTNNAL1
NextProtQ9UBT7 [Medical]
TSGene8727
GENETestsCTNNAL1
Huge Navigator CTNNAL1 [HugePedia]
snp3D : Map Gene to Disease8727
BioCentury BCIQCTNNAL1
ClinGenCTNNAL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8727
Chemical/Pharm GKB GenePA27011
Clinical trialCTNNAL1
Miscellaneous
canSAR (ICR)CTNNAL1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTNNAL1
EVEXCTNNAL1
GoPubMedCTNNAL1
iHOPCTNNAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:57:58 CEST 2017

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