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DCLRE1A (DNA cross-link repair 1A)

Identity

Alias_namesDNA cross-link repair 1A (PSO2 homolog
Alias_symbol (synonym)SNM1
PSO2
KIAA0086
hSNM1
Other aliasSNM1A
HGNC (Hugo) DCLRE1A
LocusID (NCBI) 9937
Atlas_Id 40271
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 113834724 and ends at 113854404 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC1A3 (5p13.2) / DCLRE1A (10q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCLRE1A   17660
Cards
Entrez_Gene (NCBI)DCLRE1A  9937  DNA cross-link repair 1A
AliasesPSO2; SNM1; SNM1A
GeneCards (Weizmann)DCLRE1A
Ensembl hg19 (Hinxton)ENSG00000198924 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198924 [Gene_View]  chr10:113834724-113854404 [Contig_View]  DCLRE1A [Vega]
ICGC DataPortalENSG00000198924
TCGA cBioPortalDCLRE1A
AceView (NCBI)DCLRE1A
Genatlas (Paris)DCLRE1A
WikiGenes9937
SOURCE (Princeton)DCLRE1A
Genetics Home Reference (NIH)DCLRE1A
Genomic and cartography
GoldenPath hg38 (UCSC)DCLRE1A  -     chr10:113834724-113854404 -  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCLRE1A  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblDCLRE1A - 10q25.3 [CytoView hg19]  DCLRE1A - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBIDCLRE1A [Mapview hg19]  DCLRE1A [Mapview hg38]
OMIM609682   
Gene and transcription
Genbank (Entrez)AK307187 BC013124 BC062582 D42045 DA456679
RefSeq transcript (Entrez)NM_001271816 NM_014881
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCLRE1A
Cluster EST : UnigeneHs.703616 [ NCBI ]
CGAP (NCI)Hs.703616
Alternative Splicing GalleryENSG00000198924
Gene ExpressionDCLRE1A [ NCBI-GEO ]   DCLRE1A [ EBI - ARRAY_EXPRESS ]   DCLRE1A [ SEEK ]   DCLRE1A [ MEM ]
Gene Expression Viewer (FireBrowse)DCLRE1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9937
GTEX Portal (Tissue expression)DCLRE1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PJP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PJP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PJP8
Splice isoforms : SwissVarQ6PJP8
PhosPhoSitePlusQ6PJP8
Domains : Interpro (EBI)DRMBL    Metallo-B-lactamas   
Domain families : Pfam (Sanger)DRMBL (PF07522)   
Domain families : Pfam (NCBI)pfam07522   
Conserved Domain (NCBI)DCLRE1A
DMDM Disease mutations9937
Blocks (Seattle)DCLRE1A
PDB (SRS)4B87    5AHR   
PDB (PDBSum)4B87    5AHR   
PDB (IMB)4B87    5AHR   
PDB (RSDB)4B87    5AHR   
Structural Biology KnowledgeBase4B87    5AHR   
SCOP (Structural Classification of Proteins)4B87    5AHR   
CATH (Classification of proteins structures)4B87    5AHR   
SuperfamilyQ6PJP8
Human Protein AtlasENSG00000198924
Peptide AtlasQ6PJP8
HPRD08519
IPIIPI00478916   
Protein Interaction databases
DIP (DOE-UCLA)Q6PJP8
IntAct (EBI)Q6PJP8
FunCoupENSG00000198924
BioGRIDDCLRE1A
STRING (EMBL)DCLRE1A
ZODIACDCLRE1A
Ontologies - Pathways
QuickGOQ6PJP8
Ontology : AmiGOnuclear chromosome, telomeric region  fibrillar center  damaged DNA binding  nucleoplasm  nucleoplasm  double-strand break repair via nonhomologous end joining  cell cycle  protection from non-homologous end joining at telomere  5'-3' exodeoxyribonuclease activity  interstrand cross-link repair  interstrand cross-link repair  cell division  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInuclear chromosome, telomeric region  fibrillar center  damaged DNA binding  nucleoplasm  nucleoplasm  double-strand break repair via nonhomologous end joining  cell cycle  protection from non-homologous end joining at telomere  5'-3' exodeoxyribonuclease activity  interstrand cross-link repair  interstrand cross-link repair  cell division  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkDCLRE1A
Atlas of Cancer Signalling NetworkDCLRE1A
Wikipedia pathwaysDCLRE1A
Orthology - Evolution
OrthoDB9937
GeneTree (enSembl)ENSG00000198924
Phylogenetic Trees/Animal Genes : TreeFamDCLRE1A
HOVERGENQ6PJP8
HOGENOMQ6PJP8
Homologs : HomoloGeneDCLRE1A
Homology/Alignments : Family Browser (UCSC)DCLRE1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCLRE1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCLRE1A
dbVarDCLRE1A
ClinVarDCLRE1A
1000_GenomesDCLRE1A 
Exome Variant ServerDCLRE1A
ExAC (Exome Aggregation Consortium)DCLRE1A (select the gene name)
Genetic variants : HAPMAP9937
Genomic Variants (DGV)DCLRE1A [DGVbeta]
DECIPHERDCLRE1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCLRE1A 
Mutations
ICGC Data PortalDCLRE1A 
TCGA Data PortalDCLRE1A 
Broad Tumor PortalDCLRE1A
OASIS PortalDCLRE1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCLRE1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCLRE1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCLRE1A
DgiDB (Drug Gene Interaction Database)DCLRE1A
DoCM (Curated mutations)DCLRE1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCLRE1A (select a term)
intoGenDCLRE1A
Cancer3DDCLRE1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609682   
Orphanet
MedgenDCLRE1A
Genetic Testing Registry DCLRE1A
NextProtQ6PJP8 [Medical]
TSGene9937
GENETestsDCLRE1A
Huge Navigator DCLRE1A [HugePedia]
snp3D : Map Gene to Disease9937
BioCentury BCIQDCLRE1A
ClinGenDCLRE1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9937
Chemical/Pharm GKB GenePA27174
Clinical trialDCLRE1A
Miscellaneous
canSAR (ICR)DCLRE1A (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCLRE1A
EVEXDCLRE1A
GoPubMedDCLRE1A
iHOPDCLRE1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:12:49 CEST 2017

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