DDB1 (damage-specific DNA binding protein 1, 127kDa)

Identity

Other names	DDBA
	UV-DDB1
	XAP1
	XPCE
	XPE
	XPE-BF
HGNC	DDB1
Location	11q12-q13
Location_base_pair	Starts at 60823495 and ends at 60857242 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	DDB1   2717
Entrez_Gene	DDB1  1642  damage-specific DNA binding protein 1, 127kDa
	Cards
GeneCards	DDB1
Ensembl	DDB1 [Search_View]   ENSG00000167986 [Gene_View]
Genatlas	DDB1
GeneLynx	DDB1
eGenome	DDB1
euGene	1642
	Genomic and cartography
GoldenPath	DDB1  -     chr11:60823495-60857242 -  11q12.2   [Description]    (hg18-March_2006)
Ensembl	DDB1 - 11q12.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	DDB1
	Gene and transcription
Genbank	AJ002955 [ ENTREZ ]
Genbank	AK299650 [ ENTREZ ]
Genbank	AK311476 [ ENTREZ ]
Genbank	AK312436 [ ENTREZ ]
Genbank	AL831958 [ ENTREZ ]
RefSeq	NM_001923 [ SRS ]    NM_001923 [ ENTREZ ]
RefSeq	AC_000054 [ SRS ]    AC_000054 [ ENTREZ ]
RefSeq	AC_000143 [ SRS ]    AC_000143 [ ENTREZ ]
RefSeq	NC_000011 [ SRS ]    NC_000011 [ ENTREZ ]
RefSeq	NT_033903 [ SRS ]    NT_033903 [ ENTREZ ]
RefSeq	NW_001838024 [ SRS ]    NW_001838024 [ ENTREZ ]
RefSeq	NW_925106 [ SRS ]    NW_925106 [ ENTREZ ]
AceView	DDB1 AceView - NCBI
Unigene	Hs.705536 [ SRS ]    Hs.705536 [ NCBI ]     HS705536 [ spliceNest ]
Fast-db	7738 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q16531 [ SRS]    Q16531 [ EXPASY ]     Q16531 [ INTERPRO ]     Q16531 [ UNIPROT ]
Interpro	IPR004871 Cleav_polyA_spec_factor_asu_C [ SRS ]    IPR004871 Cleav_polyA_spec_factor_asu_C [ EBI ]
CluSTr	Q16531
Pfam	PF03178 CPSF_A [ SRS ]    PF03178 CPSF_A [ Sanger ]    pfam03178 [ NCBI-CDD ]
Blocks	Q16531
PDB	2B5L [ SRS ]    2B5L [ PdbSum ],   2B5L [ IMB ]   2B5L [ RSDB ]
PDB	2B5M [ SRS ]    2B5M [ PdbSum ],   2B5M [ IMB ]   2B5M [ RSDB ]
PDB	2B5N [ SRS ]    2B5N [ PdbSum ],   2B5N [ IMB ]   2B5N [ RSDB ]
PDB	2HYE [ SRS ]    2HYE [ PdbSum ],   2HYE [ IMB ]   2HYE [ RSDB ]
HPRD	10952
	Protein Interaction databases
DIP	Q16531
IntAct	Q16531
	Polymorphism : SNP, mutations, diseases
OMIM	600045    [ map ]
GENECLINICS	600045
SNP	DDB1 [dbSNP-NCBI]
SNP	NM_001923 [SNP-NCI]
SNP	DDB1 [GeneSNPs - Utah]  DDB1] [HGBASE - SRS]
HAPMAP	DDB1 [HAPMAP]
COSMIC	DDB1 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	DDB1
	General knowledge
Family Browser	DDB1 [UCSC Family Browser]
SOURCE	NM_001923
SMD	Hs.705536
SAGE	Hs.705536
GO	cell cycle checkpoint [Amigo]  cell cycle checkpoint
GO	nucleotide-excision repair, DNA damage removal [Amigo]  nucleotide-excision repair, DNA damage removal
GO	damaged DNA binding [Amigo]  damaged DNA binding
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	nucleoplasm [Amigo]  nucleoplasm
GO	cytoplasm [Amigo]  cytoplasm
GO	interspecies interaction between organisms [Amigo]  interspecies interaction between organisms
PubGene	DDB1
TreeFam	DDB1
CTD	1642 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	DDB1 Related clones (RZPD - Berlin)
	PubMed
PubMed	50 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:09:50 2008