Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FCAR (Fc fragment of IgA receptor)

Identity

Alias_namesFc fragment of IgA
Alias_symbol (synonym)CD89
Other aliasCTB-61M7.2
FcalphaRI
HGNC (Hugo) FCAR
LocusID (NCBI) 2204
Atlas_Id 47634
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54874093 and ends at 54891420 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FCAR (19q13.42) / CNN2 (19p13.3)FCAR (19q13.42) / FCAR (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FCAR   3608
Cards
Entrez_Gene (NCBI)FCAR  2204  Fc fragment of IgA receptor
AliasesCD89; CTB-61M7.2; FcalphaRI
GeneCards (Weizmann)FCAR
Ensembl hg19 (Hinxton)ENSG00000186431 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186431 [Gene_View]  chr19:54874093-54891420 [Contig_View]  FCAR [Vega]
ICGC DataPortalENSG00000186431
TCGA cBioPortalFCAR
AceView (NCBI)FCAR
Genatlas (Paris)FCAR
WikiGenes2204
SOURCE (Princeton)FCAR
Genetics Home Reference (NIH)FCAR
Genomic and cartography
GoldenPath hg38 (UCSC)FCAR  -     chr19:54874093-54891420 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FCAR  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblFCAR - 19q13.42 [CytoView hg19]  FCAR - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIFCAR [Mapview hg19]  FCAR [Mapview hg38]
OMIM147045   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_002000 NM_133269 NM_133271 NM_133272 NM_133273 NM_133274 NM_133277 NM_133278 NM_133279 NM_133280
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_187636 NT_187641 NT_187671 NT_187674 NT_187675 NT_187676 NT_187677 NT_187683 NT_187693 NW_003571055 NW_003571060
Consensus coding sequences : CCDS (NCBI)FCAR
Cluster EST : UnigeneHs.659872 [ NCBI ]
CGAP (NCI)Hs.659872
Alternative Splicing GalleryENSG00000186431
Gene ExpressionFCAR [ NCBI-GEO ]   FCAR [ EBI - ARRAY_EXPRESS ]   FCAR [ SEEK ]   FCAR [ MEM ]
Gene Expression Viewer (FireBrowse)FCAR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2204
GTEX Portal (Tissue expression)FCAR
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24071   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP24071  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP24071
Splice isoforms : SwissVarP24071
PhosPhoSitePlusP24071
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)FCAR
DMDM Disease mutations2204
Blocks (Seattle)FCAR
PDB (SRS)1OVZ    1OW0    1UCT   
PDB (PDBSum)1OVZ    1OW0    1UCT   
PDB (IMB)1OVZ    1OW0    1UCT   
PDB (RSDB)1OVZ    1OW0    1UCT   
Structural Biology KnowledgeBase1OVZ    1OW0    1UCT   
SCOP (Structural Classification of Proteins)1OVZ    1OW0    1UCT   
CATH (Classification of proteins structures)1OVZ    1OW0    1UCT   
SuperfamilyP24071
Human Protein AtlasENSG00000186431
Peptide AtlasP24071
HPRD00914
IPIIPI00027189   IPI00218024   IPI00218026   IPI00218027   IPI00107482   IPI00218029   IPI00383624   IPI00022077   IPI00107479   IPI00022065   IPI00163802   IPI00892958   IPI00892550   IPI01014448   IPI01014932   IPI01009796   IPI01010184   IPI01010499   IPI01010905   IPI01011839   IPI01013436   
Protein Interaction databases
DIP (DOE-UCLA)P24071
IntAct (EBI)P24071
FunCoupENSG00000186431
BioGRIDFCAR
STRING (EMBL)FCAR
ZODIACFCAR
Ontologies - Pathways
QuickGOP24071
Ontology : AmiGOextracellular region  plasma membrane  plasma membrane  integral component of plasma membrane  immune response  IgA binding  specific granule membrane  neutrophil degranulation  tertiary granule membrane  ficolin-1-rich granule membrane  
Ontology : EGO-EBIextracellular region  plasma membrane  plasma membrane  integral component of plasma membrane  immune response  IgA binding  specific granule membrane  neutrophil degranulation  tertiary granule membrane  ficolin-1-rich granule membrane  
Pathways : KEGGPhagosome    Staphylococcus aureus infection   
NDEx NetworkFCAR
Atlas of Cancer Signalling NetworkFCAR
Wikipedia pathwaysFCAR
Orthology - Evolution
OrthoDB2204
GeneTree (enSembl)ENSG00000186431
Phylogenetic Trees/Animal Genes : TreeFamFCAR
HOVERGENP24071
HOGENOMP24071
Homologs : HomoloGeneFCAR
Homology/Alignments : Family Browser (UCSC)FCAR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFCAR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FCAR
dbVarFCAR
ClinVarFCAR
1000_GenomesFCAR 
Exome Variant ServerFCAR
ExAC (Exome Aggregation Consortium)FCAR (select the gene name)
Genetic variants : HAPMAP2204
Genomic Variants (DGV)FCAR [DGVbeta]
DECIPHERFCAR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFCAR 
Mutations
ICGC Data PortalFCAR 
TCGA Data PortalFCAR 
Broad Tumor PortalFCAR
OASIS PortalFCAR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFCAR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFCAR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FCAR
DgiDB (Drug Gene Interaction Database)FCAR
DoCM (Curated mutations)FCAR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FCAR (select a term)
intoGenFCAR
Cancer3DFCAR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147045   
Orphanet
MedgenFCAR
Genetic Testing Registry FCAR
NextProtP24071 [Medical]
TSGene2204
GENETestsFCAR
Target ValidationFCAR
Huge Navigator FCAR [HugePedia]
snp3D : Map Gene to Disease2204
BioCentury BCIQFCAR
ClinGenFCAR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2204
Chemical/Pharm GKB GenePA28055
Clinical trialFCAR
Miscellaneous
canSAR (ICR)FCAR (select the gene name)
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFCAR
EVEXFCAR
GoPubMedFCAR
iHOPFCAR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:01:06 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.