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FEM1B (fem-1 homolog b (C. elegans))

Identity

Other namesF1A-ALPHA
FIAA
HGNC (Hugo) FEM1B
LocusID (NCBI) 10116
Location 15q23
Location_base_pair Starts at 68570141 and ends at 68583640 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)FEM1B   3649
Entrez_Gene (NCBI)FEM1B  10116  fem-1 homolog b (C. elegans)
Cards
GeneCards (Weizmann)FEM1B
Ensembl (Hinxton)ENSG00000169018 [Gene_View]  chr15:68570141-68583640 [Contig_View]  FEM1B [Vega]
AceView (NCBI)FEM1B
Genatlas (Paris)FEM1B
SOURCE (Stanford)NM_015322
Genomic and cartography
GoldenPath (UCSC)FEM1B  -  15q23   chr15:68570141-68583640 +  15q23   [Description]    (hg19-Feb_2009)
EnsemblFEM1B - 15q23 [CytoView]
Mapping of homologs : NCBIFEM1B [Mapview]
OMIM613539   
Gene and transcription
Genbank (Entrez)AB007856 AF178632 AF204883 AK098620 AK290167
RefSeq transcript (SRS)NM_015322
RefSeq transcript (Entrez)NM_015322
RefSeq genomic (SRS)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838218 NW_004078084
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838218 NW_004078084
Consensus coding sequences : CCDS (NCBI)FEM1B
Cluster EST : UnigeneHs.362733 [ SRS ] Hs.362733 [ NCBI ]
CGAP (NCI)Hs.362733
Alternative Splicing : Fast-db (Paris)GSHG0009963
Alternative Splicing GalleryENSG00000169018
Gene ExpressionFEM1B [ NCBI-GEO ]   FEM1B [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK73 (SRS) Q9UK73 (Uniprot)
NextProtQ9UK73
With graphics : InterProQ9UK73
Splice isoforms : SwissVarQ9UK73(Swissvar)
Domaine pattern : Prosite (SRS)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    TPR (PS50005)    TPR_REGION (PS50293)   
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (SRS)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Related proteins : CluSTrQ9UK73
Domain families : Pfam (SRS)Ank (PF00023)   
Domain families : Pfam (Sanger)Ank (PF00023)   
Domain families : Pfam (NCBI)pfam00023   
Domain families : Smart (EMBL)ANK (SM00248)  
DMDM10116
Blocks (Seattle)Q9UK73
Human Protein AtlasENSG00000169018
HPRD16889
IPIIPI00033419   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK73
IntAct (EBI)Q9UK73
FunCoupENSG00000169018
REACTOMEFEM1B
Protein Interaction Database10116
BioGRIDFEM1B
InParanoidQ9UK73
Interologous Interaction database Q9UK73
IntegromeDBFEM1B
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FEM1B
SNP (GeneSNP Utah)FEM1B
SNP : HGBaseFEM1B
Genetic variants : HAPMAPFEM1B
Somatic Mutations in Cancer : COSMICFEM1B 
CONAN: Copy Number AnalysisFEM1B 
Mutations and Diseases : HGMDFEM1B
OMIM613539   
GENETests613539   
Disease Genetic AssociationFEM1B
Huge Navigator FEM1B [HugePedia]  FEM1B [HugeCancerGEM]
Genomic VariantsFEM1B  FEM1B [DGVbeta]
snp3D : Map Gene to Disease10116
General knowledge
Homologs : HomoloGeneFEM1B
Homology/Alignments : Family Browser (UCSC)FEM1B
Phylogenetic Trees/Animal Genes : TreeFamFEM1B
Chemical/Protein Interactions : CTD10116
Chemical/Pharm GKB GenePA28089
Clinical trialFEM1B
Cancer Resource (Charite)ENSG00000169018
Ontology : AmiGOubiquitin-protein ligase activity  death receptor binding  death receptor binding  protein binding  nucleus  nucleolus  cytoplasm  apoptotic process  induction of apoptosis  regulation of apoptotic process  regulation of ubiquitin-protein ligase activity  branching involved in prostate gland morphogenesis  epithelial cell maturation involved in prostate gland development  regulation of DNA damage checkpoint  
Ontology : EGO-EBIubiquitin-protein ligase activity  death receptor binding  death receptor binding  protein binding  nucleus  nucleolus  cytoplasm  apoptotic process  induction of apoptosis  regulation of apoptotic process  regulation of ubiquitin-protein ligase activity  branching involved in prostate gland morphogenesis  epithelial cell maturation involved in prostate gland development  regulation of DNA damage checkpoint  
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
PubGeneFEM1B
iHOPFEM1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:33:16 CEST 2013
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