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FEM1B (fem-1 homolog B)

Identity

Alias_namesFEM-1 (C. elegans) homolog b
fem-1 homolog b (C. elegans)
Other aliasF1A-ALPHA
F1AA
FEM1-beta
HGNC (Hugo) FEM1B
LocusID (NCBI) 10116
Atlas_Id 52817
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 68277803 and ends at 68295865 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FEM1B (15q23) / FEM1B (15q23)FEM1B (15q23) / KCNG3 (2p21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FEM1B   3649
Cards
Entrez_Gene (NCBI)FEM1B  10116  fem-1 homolog B
AliasesF1A-ALPHA; F1AA; FEM1-beta
GeneCards (Weizmann)FEM1B
Ensembl hg19 (Hinxton)ENSG00000169018 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169018 [Gene_View]  chr15:68277803-68295865 [Contig_View]  FEM1B [Vega]
ICGC DataPortalENSG00000169018
TCGA cBioPortalFEM1B
AceView (NCBI)FEM1B
Genatlas (Paris)FEM1B
WikiGenes10116
SOURCE (Princeton)FEM1B
Genetics Home Reference (NIH)FEM1B
Genomic and cartography
GoldenPath hg38 (UCSC)FEM1B  -     chr15:68277803-68295865 +  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FEM1B  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblFEM1B - 15q23 [CytoView hg19]  FEM1B - 15q23 [CytoView hg38]
Mapping of homologs : NCBIFEM1B [Mapview hg19]  FEM1B [Mapview hg38]
OMIM613539   
Gene and transcription
Genbank (Entrez)AB007856 AF178632 AF204883 AK098620 AK290167
RefSeq transcript (Entrez)NM_015322
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FEM1B
Cluster EST : UnigeneHs.592737 [ NCBI ]
CGAP (NCI)Hs.592737
Alternative Splicing GalleryENSG00000169018
Gene ExpressionFEM1B [ NCBI-GEO ]   FEM1B [ EBI - ARRAY_EXPRESS ]   FEM1B [ SEEK ]   FEM1B [ MEM ]
Gene Expression Viewer (FireBrowse)FEM1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10116
GTEX Portal (Tissue expression)FEM1B
Human Protein AtlasENSG00000169018-FEM1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK73
Splice isoforms : SwissVarQ9UK73
PhosPhoSitePlusQ9UK73
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)FEM1B
DMDM Disease mutations10116
Blocks (Seattle)FEM1B
SuperfamilyQ9UK73
Human Protein Atlas [tissue]ENSG00000169018-FEM1B [tissue]
Peptide AtlasQ9UK73
HPRD16889
IPIIPI00033419   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK73
IntAct (EBI)Q9UK73
FunCoupENSG00000169018
BioGRIDFEM1B
STRING (EMBL)FEM1B
ZODIACFEM1B
Ontologies - Pathways
QuickGOQ9UK73
Ontology : AmiGOubiquitin-protein transferase activity  death receptor binding  death receptor binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  apoptotic process  protein ubiquitination  regulation of ubiquitin-protein transferase activity  branching involved in prostate gland morphogenesis  epithelial cell maturation involved in prostate gland development  regulation of extrinsic apoptotic signaling pathway via death domain receptors  regulation of DNA damage checkpoint  
Ontology : EGO-EBIubiquitin-protein transferase activity  death receptor binding  death receptor binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  apoptotic process  protein ubiquitination  regulation of ubiquitin-protein transferase activity  branching involved in prostate gland morphogenesis  epithelial cell maturation involved in prostate gland development  regulation of extrinsic apoptotic signaling pathway via death domain receptors  regulation of DNA damage checkpoint  
NDEx NetworkFEM1B
Atlas of Cancer Signalling NetworkFEM1B
Wikipedia pathwaysFEM1B
Orthology - Evolution
OrthoDB10116
GeneTree (enSembl)ENSG00000169018
Phylogenetic Trees/Animal Genes : TreeFamFEM1B
HOVERGENQ9UK73
HOGENOMQ9UK73
Homologs : HomoloGeneFEM1B
Homology/Alignments : Family Browser (UCSC)FEM1B
Gene fusions - Rearrangements
Fusion: Tumor Portal FEM1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFEM1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FEM1B
dbVarFEM1B
ClinVarFEM1B
1000_GenomesFEM1B 
Exome Variant ServerFEM1B
ExAC (Exome Aggregation Consortium)ENSG00000169018
GNOMAD BrowserENSG00000169018
Genetic variants : HAPMAP10116
Genomic Variants (DGV)FEM1B [DGVbeta]
DECIPHERFEM1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFEM1B 
Mutations
ICGC Data PortalFEM1B 
TCGA Data PortalFEM1B 
Broad Tumor PortalFEM1B
OASIS PortalFEM1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFEM1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFEM1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FEM1B
DgiDB (Drug Gene Interaction Database)FEM1B
DoCM (Curated mutations)FEM1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FEM1B (select a term)
intoGenFEM1B
Cancer3DFEM1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613539   
Orphanet
MedgenFEM1B
Genetic Testing Registry FEM1B
NextProtQ9UK73 [Medical]
TSGene10116
GENETestsFEM1B
Target ValidationFEM1B
Huge Navigator FEM1B [HugePedia]
snp3D : Map Gene to Disease10116
BioCentury BCIQFEM1B
ClinGenFEM1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10116
Chemical/Pharm GKB GenePA28089
Clinical trialFEM1B
Miscellaneous
canSAR (ICR)FEM1B (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFEM1B
EVEXFEM1B
GoPubMedFEM1B
iHOPFEM1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:49:55 CET 2017

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