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FUT4 (fucosyltransferase 4)

Identity

Alias_namesCD15
FCT3A
ELFT
ELAM ligand fucosyltransferase
Alias_symbol (synonym)FUC-TIV
Other aliasFUTIV
LeX
SSEA-1
HGNC (Hugo) FUT4
LocusID (NCBI) 2526
Atlas_Id 49792
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 94277017 and ends at 94283064 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FUT4   4015
Cards
Entrez_Gene (NCBI)FUT4  2526  fucosyltransferase 4
AliasesCD15; ELFT; FCT3A; FUC-TIV; 
FUTIV; LeX; SSEA-1
GeneCards (Weizmann)FUT4
Ensembl hg19 (Hinxton)ENSG00000196371 [Gene_View]  chr11:94277017-94283064 [Contig_View]  FUT4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196371 [Gene_View]  chr11:94277017-94283064 [Contig_View]  FUT4 [Vega]
ICGC DataPortalENSG00000196371
TCGA cBioPortalFUT4
AceView (NCBI)FUT4
Genatlas (Paris)FUT4
WikiGenes2526
SOURCE (Princeton)FUT4
Genetics Home Reference (NIH)FUT4
Genomic and cartography
GoldenPath hg19 (UCSC)FUT4  -     chr11:94277017-94283064 +  11q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FUT4  -     11q21   [Description]    (hg38-Dec_2013)
EnsemblFUT4 - 11q21 [CytoView hg19]  FUT4 - 11q21 [CytoView hg38]
Mapping of homologs : NCBIFUT4 [Mapview hg19]  FUT4 [Mapview hg38]
OMIM104230   
Gene and transcription
Genbank (Entrez)AA029661 AA029722 AF305083 BC041922 BC136373
RefSeq transcript (Entrez)NM_002033
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929380
Consensus coding sequences : CCDS (NCBI)FUT4
Cluster EST : UnigeneHs.623098 [ NCBI ]
CGAP (NCI)Hs.623098
Alternative Splicing GalleryENSG00000196371
Gene ExpressionFUT4 [ NCBI-GEO ]   FUT4 [ EBI - ARRAY_EXPRESS ]   FUT4 [ SEEK ]   FUT4 [ MEM ]
Gene Expression Viewer (FireBrowse)FUT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2526
GTEX Portal (Tissue expression)FUT4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP22083   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP22083  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP22083
Splice isoforms : SwissVarP22083
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusP22083
Domains : Interpro (EBI)Glyco_tran_10_N    Glyco_trans_10   
Domain families : Pfam (Sanger)Glyco_tran_10_N (PF17039)    Glyco_transf_10 (PF00852)   
Domain families : Pfam (NCBI)pfam17039    pfam00852   
Conserved Domain (NCBI)FUT4
DMDM Disease mutations2526
Blocks (Seattle)FUT4
SuperfamilyP22083
Human Protein AtlasENSG00000196371
Peptide AtlasP22083
HPRD00083
IPIIPI00219011   IPI00748580   
Protein Interaction databases
DIP (DOE-UCLA)P22083
IntAct (EBI)P22083
FunCoupENSG00000196371
BioGRIDFUT4
STRING (EMBL)FUT4
ZODIACFUT4
Ontologies - Pathways
QuickGOP22083
Ontology : AmiGOGolgi apparatus  carbohydrate metabolic process  protein glycosylation  protein glycosylation  fucosyltransferase activity  cell surface  membrane  integral component of membrane  Golgi cisterna membrane  fucosylation  L-fucose catabolic process  alpha-(1->3)-fucosyltransferase activity  cell periphery  
Ontology : EGO-EBIGolgi apparatus  carbohydrate metabolic process  protein glycosylation  protein glycosylation  fucosyltransferase activity  cell surface  membrane  integral component of membrane  Golgi cisterna membrane  fucosylation  L-fucose catabolic process  alpha-(1->3)-fucosyltransferase activity  cell periphery  
Pathways : BIOCARTASteps in the Glycosylation of Mammalian N-linked Oligosaccarides [Genes]   
Pathways : KEGGOther types of O-glycan biosynthesis    Glycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkFUT4
Atlas of Cancer Signalling NetworkFUT4
Wikipedia pathwaysFUT4
Orthology - Evolution
OrthoDB2526
GeneTree (enSembl)ENSG00000196371
Phylogenetic Trees/Animal Genes : TreeFamFUT4
HOVERGENP22083
HOGENOMP22083
Homologs : HomoloGeneFUT4
Homology/Alignments : Family Browser (UCSC)FUT4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFUT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FUT4
dbVarFUT4
ClinVarFUT4
1000_GenomesFUT4 
Exome Variant ServerFUT4
ExAC (Exome Aggregation Consortium)FUT4 (select the gene name)
Genetic variants : HAPMAP2526
Genomic Variants (DGV)FUT4 [DGVbeta]
DECIPHER (Syndromes)11:94277017-94283064  ENSG00000196371
CONAN: Copy Number AnalysisFUT4 
Mutations
ICGC Data PortalFUT4 
TCGA Data PortalFUT4 
Broad Tumor PortalFUT4
OASIS PortalFUT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFUT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFUT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FUT4
DgiDB (Drug Gene Interaction Database)FUT4
DoCM (Curated mutations)FUT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FUT4 (select a term)
intoGenFUT4
Cancer3DFUT4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104230   
Orphanet
MedgenFUT4
Genetic Testing Registry FUT4
NextProtP22083 [Medical]
TSGene2526
GENETestsFUT4
Huge Navigator FUT4 [HugePedia]
snp3D : Map Gene to Disease2526
BioCentury BCIQFUT4
ClinGenFUT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2526
Chemical/Pharm GKB GenePA28431
Clinical trialFUT4
Miscellaneous
canSAR (ICR)FUT4 (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFUT4
EVEXFUT4
GoPubMedFUT4
iHOPFUT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:06:44 CET 2017

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