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FUT6 (fucosyltransferase 6)

Identity

Alias_symbol (synonym)FT1A
FCT3A
FucT-VI
FLJ40754
Other aliasFuc-TVI
HGNC (Hugo) FUT6
LocusID (NCBI) 2528
Atlas_Id 45954
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5830637 and ends at 5839742 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FUT6   4017
Cards
Entrez_Gene (NCBI)FUT6  2528  fucosyltransferase 6
AliasesFCT3A; FT1A; Fuc-TVI; FucT-VI
GeneCards (Weizmann)FUT6
Ensembl hg19 (Hinxton)ENSG00000156413 [Gene_View]  chr19:5830637-5839742 [Contig_View]  FUT6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156413 [Gene_View]  chr19:5830637-5839742 [Contig_View]  FUT6 [Vega]
ICGC DataPortalENSG00000156413
TCGA cBioPortalFUT6
AceView (NCBI)FUT6
Genatlas (Paris)FUT6
WikiGenes2528
SOURCE (Princeton)FUT6
Genetics Home Reference (NIH)FUT6
Genomic and cartography
GoldenPath hg19 (UCSC)FUT6  -     chr19:5830637-5839742 -  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FUT6  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblFUT6 - 19p13.3 [CytoView hg19]  FUT6 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIFUT6 [Mapview hg19]  FUT6 [Mapview hg38]
OMIM136836   613852   
Gene and transcription
Genbank (Entrez)AF131211 AK098073 AK225795 AK313130 BC040472
RefSeq transcript (Entrez)NM_000150 NM_001040701
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_007505 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)FUT6
Cluster EST : UnigeneHs.705615 [ NCBI ]
CGAP (NCI)Hs.705615
Alternative Splicing GalleryENSG00000156413
Gene ExpressionFUT6 [ NCBI-GEO ]   FUT6 [ EBI - ARRAY_EXPRESS ]   FUT6 [ SEEK ]   FUT6 [ MEM ]
Gene Expression Viewer (FireBrowse)FUT6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2528
GTEX Portal (Tissue expression)FUT6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51993   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51993  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51993
Splice isoforms : SwissVarP51993
Catalytic activity : Enzyme2.4.1.65 [ Enzyme-Expasy ]   2.4.1.652.4.1.65 [ IntEnz-EBI ]   2.4.1.65 [ BRENDA ]   2.4.1.65 [ KEGG ]   
PhosPhoSitePlusP51993
Domains : Interpro (EBI)Glyco_tran_10_N    Glyco_trans_10   
Domain families : Pfam (Sanger)Glyco_tran_10_N (PF17039)    Glyco_transf_10 (PF00852)   
Domain families : Pfam (NCBI)pfam17039    pfam00852   
Conserved Domain (NCBI)FUT6
DMDM Disease mutations2528
Blocks (Seattle)FUT6
SuperfamilyP51993
Human Protein AtlasENSG00000156413
Peptide AtlasP51993
HPRD00651
IPIIPI00021384   IPI00414138   IPI01017951   IPI00982371   IPI00984434   IPI00982957   IPI00983721   IPI00983047   
Protein Interaction databases
DIP (DOE-UCLA)P51993
IntAct (EBI)P51993
FunCoupENSG00000156413
BioGRIDFUT6
STRING (EMBL)FUT6
ZODIACFUT6
Ontologies - Pathways
QuickGOP51993
Ontology : AmiGOGolgi apparatus  Golgi apparatus  protein glycosylation  protein glycosylation  fucosyltransferase activity  integral component of membrane  3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity  Golgi cisterna membrane  fucosylation  fucosylation  L-fucose catabolic process  alpha-(1->3)-fucosyltransferase activity  extracellular exosome  
Ontology : EGO-EBIGolgi apparatus  Golgi apparatus  protein glycosylation  protein glycosylation  fucosyltransferase activity  integral component of membrane  3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity  Golgi cisterna membrane  fucosylation  fucosylation  L-fucose catabolic process  alpha-(1->3)-fucosyltransferase activity  extracellular exosome  
Pathways : BIOCARTASteps in the Glycosylation of Mammalian N-linked Oligosaccarides [Genes]   
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkFUT6
Atlas of Cancer Signalling NetworkFUT6
Wikipedia pathwaysFUT6
Orthology - Evolution
OrthoDB2528
GeneTree (enSembl)ENSG00000156413
Phylogenetic Trees/Animal Genes : TreeFamFUT6
HOVERGENP51993
HOGENOMP51993
Homologs : HomoloGeneFUT6
Homology/Alignments : Family Browser (UCSC)FUT6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFUT6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FUT6
dbVarFUT6
ClinVarFUT6
1000_GenomesFUT6 
Exome Variant ServerFUT6
ExAC (Exome Aggregation Consortium)FUT6 (select the gene name)
Genetic variants : HAPMAP2528
Genomic Variants (DGV)FUT6 [DGVbeta]
DECIPHER (Syndromes)19:5830637-5839742  ENSG00000156413
CONAN: Copy Number AnalysisFUT6 
Mutations
ICGC Data PortalFUT6 
TCGA Data PortalFUT6 
Broad Tumor PortalFUT6
OASIS PortalFUT6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFUT6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFUT6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FUT6
DgiDB (Drug Gene Interaction Database)FUT6
DoCM (Curated mutations)FUT6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FUT6 (select a term)
intoGenFUT6
Cancer3DFUT6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM136836    613852   
Orphanet
MedgenFUT6
Genetic Testing Registry FUT6
NextProtP51993 [Medical]
TSGene2528
GENETestsFUT6
Huge Navigator FUT6 [HugePedia]
snp3D : Map Gene to Disease2528
BioCentury BCIQFUT6
ClinGenFUT6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2528
Chemical/Pharm GKB GenePA28433
Clinical trialFUT6
Miscellaneous
canSAR (ICR)FUT6 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFUT6
EVEXFUT6
GoPubMedFUT6
iHOPFUT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:06:45 CET 2017

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