GABPA (GA binding protein transcription factor, alpha subunit 60kDa)

Identity

Other names	E4TF1-60
	E4TF1A
	NFT2
	NRF2
	NRF2A
HGNC	GABPA
Location	21q21-q22.1|21q21.3
Location_base_pair	Starts at 26029200 and ends at 26066642 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	GABPA   4071
Entrez_Gene	GABPA  2551  GA binding protein transcription factor, alpha subunit 60kDa
	Cards
GeneCards	GABPA
Ensembl	GABPA [Search_View]   ENSG00000154727 [Gene_View]
Genatlas	GABPA
GeneLynx	GABPA
eGenome	GABPA
euGene	2551
	Genomic and cartography
GoldenPath	GABPA  -     chr21:26029200-26066642 +  21q21.3   [Description]    (hg18-March_2006)
Ensembl	GABPA - 21q21.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	GABPA
	Gene and transcription
Genbank	AI917898 [ ENTREZ ]
Genbank	AK223164 [ ENTREZ ]
Genbank	AK313545 [ ENTREZ ]
Genbank	BC035031 [ ENTREZ ]
Genbank	BG542623 [ ENTREZ ]
RefSeq	NM_002040 [ SRS ]    NM_002040 [ ENTREZ ]
RefSeq	AC_000064 [ SRS ]    AC_000064 [ ENTREZ ]
RefSeq	AC_000153 [ SRS ]    AC_000153 [ ENTREZ ]
RefSeq	NC_000021 [ SRS ]    NC_000021 [ ENTREZ ]
RefSeq	NT_011512 [ SRS ]    NT_011512 [ ENTREZ ]
RefSeq	NW_001838706 [ SRS ]    NW_001838706 [ ENTREZ ]
RefSeq	NW_927384 [ SRS ]    NW_927384 [ ENTREZ ]
AceView	GABPA AceView - NCBI
Unigene	Hs.473470 [ SRS ]    Hs.473470 [ NCBI ]     HS473470 [ spliceNest ]
Fast-db	1156 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q06546 [ SRS]    Q06546 [ EXPASY ]     Q06546 [ INTERPRO ]     Q06546 [ UNIPROT ]
Prosite	PS00345 ETS_DOMAIN_1 [ SRS ]    PS00345 ETS_DOMAIN_1 [ Expasy ]
Prosite	PS00346 ETS_DOMAIN_2 [ SRS ]    PS00346 ETS_DOMAIN_2 [ Expasy ]
Prosite	PS50061 ETS_DOMAIN_3 [ SRS ]    PS50061 ETS_DOMAIN_3 [ Expasy ]
Interpro	IPR000418 Ets [ SRS ]    IPR000418 Ets [ EBI ]
Interpro	IPR003118 SAM_PNT [ SRS ]    IPR003118 SAM_PNT [ EBI ]
Interpro	IPR013761 SAM_type [ SRS ]    IPR013761 SAM_type [ EBI ]
Interpro	IPR016312 TF_GA-bd_asu [ SRS ]    IPR016312 TF_GA-bd_asu [ EBI ]
Interpro	IPR011991 Wing_hlx_DNA_bd [ SRS ]    IPR011991 Wing_hlx_DNA_bd [ EBI ]
CluSTr	Q06546
Pfam	PF00178 Ets [ SRS ]    PF00178 Ets [ Sanger ]    pfam00178 [ NCBI-CDD ]
Pfam	PF02198 SAM_PNT [ SRS ]    PF02198 SAM_PNT [ Sanger ]    pfam02198 [ NCBI-CDD ]
Smart	SM00413 ETS [EMBL]
Smart	SM00251 SAM_PNT [EMBL]
Blocks	Q06546
HPRD	11793
	Protein Interaction databases
DIP	Q06546
IntAct	Q06546
	Polymorphism : SNP, mutations, diseases
OMIM	600609    [ map ]
GENECLINICS	600609
SNP	GABPA [dbSNP-NCBI]
SNP	NM_002040 [SNP-NCI]
SNP	GABPA [GeneSNPs - Utah]  GABPA] [HGBASE - SRS]
HAPMAP	GABPA [HAPMAP]
COSMIC	GABPA [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	GABPA
	General knowledge
Family Browser	GABPA [UCSC Family Browser]
SOURCE	NM_002040
SMD	Hs.473470
SAGE	Hs.473470
GO	transcription factor activity [Amigo]  transcription factor activity
GO	RNA polymerase II transcription factor activity [Amigo]  RNA polymerase II transcription factor activity
GO	transcription coactivator activity [Amigo]  transcription coactivator activity
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	regulation of transcription from RNA polymerase II promoter [Amigo]  regulation of transcription from RNA polymerase II promoter
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
PubGene	GABPA
TreeFam	GABPA
CTD	2551 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	GABPA Related clones (RZPD - Berlin)
	PubMed
PubMed	28 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:42:29 2008