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GAS1 (growth arrest specific 1)

Identity

Other alias-
HGNC (Hugo) GAS1
LocusID (NCBI) 2619
Atlas_Id 40684
Location 9q21.33  [Link to chromosome band 9q21]
Location_base_pair Starts at 86944362 and ends at 86947189 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAS1   4165
Cards
Entrez_Gene (NCBI)GAS1  2619  growth arrest specific 1
Aliases
GeneCards (Weizmann)GAS1
Ensembl hg19 (Hinxton)ENSG00000180447 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180447 [Gene_View]  chr9:86944362-86947189 [Contig_View]  GAS1 [Vega]
ICGC DataPortalENSG00000180447
TCGA cBioPortalGAS1
AceView (NCBI)GAS1
Genatlas (Paris)GAS1
WikiGenes2619
SOURCE (Princeton)GAS1
Genetics Home Reference (NIH)GAS1
Genomic and cartography
GoldenPath hg38 (UCSC)GAS1  -     chr9:86944362-86947189 -  9q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAS1  -     9q21.33   [Description]    (hg19-Feb_2009)
EnsemblGAS1 - 9q21.33 [CytoView hg19]  GAS1 - 9q21.33 [CytoView hg38]
Mapping of homologs : NCBIGAS1 [Mapview hg19]  GAS1 [Mapview hg38]
OMIM139185   
Gene and transcription
Genbank (Entrez)BC074809 BC074908 BC132682 BC136586 BM661942
RefSeq transcript (Entrez)NM_002048
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAS1
Cluster EST : UnigeneHs.65029 [ NCBI ]
CGAP (NCI)Hs.65029
Alternative Splicing GalleryENSG00000180447
Gene ExpressionGAS1 [ NCBI-GEO ]   GAS1 [ EBI - ARRAY_EXPRESS ]   GAS1 [ SEEK ]   GAS1 [ MEM ]
Gene Expression Viewer (FireBrowse)GAS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2619
GTEX Portal (Tissue expression)GAS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54826   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP54826  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP54826
Splice isoforms : SwissVarP54826
PhosPhoSitePlusP54826
Domains : Interpro (EBI)GDNF/GAS1   
Domain families : Pfam (Sanger)GDNF (PF02351)   
Domain families : Pfam (NCBI)pfam02351   
Domain families : Smart (EMBL)GDNF (SM00907)  
Conserved Domain (NCBI)GAS1
DMDM Disease mutations2619
Blocks (Seattle)GAS1
SuperfamilyP54826
Human Protein AtlasENSG00000180447
Peptide AtlasP54826
HPRD00747
IPIIPI00008832   
Protein Interaction databases
DIP (DOE-UCLA)P54826
IntAct (EBI)P54826
FunCoupENSG00000180447
BioGRIDGAS1
STRING (EMBL)GAS1
ZODIACGAS1
Ontologies - Pathways
QuickGOP54826
Ontology : AmiGOprotein binding  plasma membrane  plasma membrane  cell cycle arrest  regulation of smoothened signaling pathway  negative regulation of protein processing  integral component of membrane  cellular response to vascular endothelial growth factor stimulus  regulation of apoptotic process  cell fate commitment  negative regulation of mitotic cell cycle  negative regulation of mitotic cell cycle  anchored component of plasma membrane  developmental growth  regulation of ER to Golgi vesicle-mediated transport  
Ontology : EGO-EBIprotein binding  plasma membrane  plasma membrane  cell cycle arrest  regulation of smoothened signaling pathway  negative regulation of protein processing  integral component of membrane  cellular response to vascular endothelial growth factor stimulus  regulation of apoptotic process  cell fate commitment  negative regulation of mitotic cell cycle  negative regulation of mitotic cell cycle  anchored component of plasma membrane  developmental growth  regulation of ER to Golgi vesicle-mediated transport  
Pathways : KEGGHedgehog signaling pathway   
NDEx NetworkGAS1
Atlas of Cancer Signalling NetworkGAS1
Wikipedia pathwaysGAS1
Orthology - Evolution
OrthoDB2619
GeneTree (enSembl)ENSG00000180447
Phylogenetic Trees/Animal Genes : TreeFamGAS1
HOVERGENP54826
HOGENOMP54826
Homologs : HomoloGeneGAS1
Homology/Alignments : Family Browser (UCSC)GAS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAS1
dbVarGAS1
ClinVarGAS1
1000_GenomesGAS1 
Exome Variant ServerGAS1
ExAC (Exome Aggregation Consortium)GAS1 (select the gene name)
Genetic variants : HAPMAP2619
Genomic Variants (DGV)GAS1 [DGVbeta]
DECIPHERGAS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAS1 
Mutations
ICGC Data PortalGAS1 
TCGA Data PortalGAS1 
Broad Tumor PortalGAS1
OASIS PortalGAS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAS1
DgiDB (Drug Gene Interaction Database)GAS1
DoCM (Curated mutations)GAS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAS1 (select a term)
intoGenGAS1
Cancer3DGAS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM139185   
Orphanet20436    20435    18904    12486    12484    12485   
MedgenGAS1
Genetic Testing Registry GAS1
NextProtP54826 [Medical]
TSGene2619
GENETestsGAS1
Huge Navigator GAS1 [HugePedia]
snp3D : Map Gene to Disease2619
BioCentury BCIQGAS1
ClinGenGAS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2619
Chemical/Pharm GKB GenePA28578
Clinical trialGAS1
Miscellaneous
canSAR (ICR)GAS1 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAS1
EVEXGAS1
GoPubMedGAS1
iHOPGAS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:16:54 CEST 2017

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