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GGNBP2 (gametogenetin binding protein 2)

Identity

Alias_namesZNF403
zinc finger protein 403
Alias_symbol (synonym)ZFP403
LZK1
FLJ22561
FLJ21230
DIF-3
DIF3
Other aliasLCRG1
HGNC (Hugo) GGNBP2
LocusID (NCBI) 79893
Atlas_Id 45910
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36544888 and ends at 36589846 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GGNBP2 (17q12) / GGNBP2 (17q12)GGNBP2 (17q12) / ZDHHC16 (10q24.1)GGNBP2 (17q12) / ZMAT4 (8p11.21)
LOC100507373 (19p13.12) / GGNBP2 (17q12)PIPOX (17q11.2) / GGNBP2 (17q12)SLC38A2 (12q13.11) / GGNBP2 (17q12)
GGNBP2 17q12 / ZDHHC16 10q24.1GGNBP2 17q12 / ZMAT4 8p11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GGNBP2   19357
Cards
Entrez_Gene (NCBI)GGNBP2  79893  gametogenetin binding protein 2
AliasesDIF-3; DIF3; LCRG1; LZK1; 
ZFP403; ZNF403
GeneCards (Weizmann)GGNBP2
Ensembl hg19 (Hinxton)ENSG00000278311 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278311 [Gene_View]  chr17:36544888-36589846 [Contig_View]  GGNBP2 [Vega]
ICGC DataPortalENSG00000278311
TCGA cBioPortalGGNBP2
AceView (NCBI)GGNBP2
Genatlas (Paris)GGNBP2
WikiGenes79893
SOURCE (Princeton)GGNBP2
Genetics Home Reference (NIH)GGNBP2
Genomic and cartography
GoldenPath hg38 (UCSC)GGNBP2  -     chr17:36544888-36589846 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GGNBP2  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblGGNBP2 - 17q12 [CytoView hg19]  GGNBP2 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIGGNBP2 [Mapview hg19]  GGNBP2 [Mapview hg38]
OMIM612275   
Gene and transcription
Genbank (Entrez)AF126964 AF268387 AJ404670 AK024883 AK026214
RefSeq transcript (Entrez)NM_024835
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187614
Consensus coding sequences : CCDS (NCBI)GGNBP2
Cluster EST : UnigeneHs.514116 [ NCBI ]
CGAP (NCI)Hs.514116
Alternative Splicing GalleryENSG00000278311
Gene ExpressionGGNBP2 [ NCBI-GEO ]   GGNBP2 [ EBI - ARRAY_EXPRESS ]   GGNBP2 [ SEEK ]   GGNBP2 [ MEM ]
Gene Expression Viewer (FireBrowse)GGNBP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79893
GTEX Portal (Tissue expression)GGNBP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3C7
Splice isoforms : SwissVarQ9H3C7
PhosPhoSitePlusQ9H3C7
Domains : Interpro (EBI)GGNBP2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GGNBP2
DMDM Disease mutations79893
Blocks (Seattle)GGNBP2
SuperfamilyQ9H3C7
Human Protein AtlasENSG00000278311
Peptide AtlasQ9H3C7
HPRD18337
IPIIPI00016284   IPI00759572   IPI00759598   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3C7
IntAct (EBI)Q9H3C7
FunCoupENSG00000278311
BioGRIDGGNBP2
STRING (EMBL)GGNBP2
ZODIACGGNBP2
Ontologies - Pathways
QuickGOQ9H3C7
Ontology : AmiGOnucleus  cytoplasm  spermatogenesis  negative regulation of cell proliferation  negative regulation of gene expression  cell differentiation  cytoplasmic vesicle  labyrinthine layer blood vessel development  negative regulation of protein tyrosine kinase activity  
Ontology : EGO-EBInucleus  cytoplasm  spermatogenesis  negative regulation of cell proliferation  negative regulation of gene expression  cell differentiation  cytoplasmic vesicle  labyrinthine layer blood vessel development  negative regulation of protein tyrosine kinase activity  
NDEx NetworkGGNBP2
Atlas of Cancer Signalling NetworkGGNBP2
Wikipedia pathwaysGGNBP2
Orthology - Evolution
OrthoDB79893
GeneTree (enSembl)ENSG00000278311
Phylogenetic Trees/Animal Genes : TreeFamGGNBP2
HOVERGENQ9H3C7
HOGENOMQ9H3C7
Homologs : HomoloGeneGGNBP2
Homology/Alignments : Family Browser (UCSC)GGNBP2
Gene fusions - Rearrangements
Fusion : MitelmanGGNBP2/ZDHHC16 [17q12/10q24.1]  
Fusion : MitelmanGGNBP2/ZMAT4 [17q12/8p11.21]  [t(8;17)(p11;q12)]  
Fusion: TCGAGGNBP2 17q12 ZDHHC16 10q24.1 THCA
Fusion: TCGAGGNBP2 17q12 ZMAT4 8p11.21 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGGNBP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GGNBP2
dbVarGGNBP2
ClinVarGGNBP2
1000_GenomesGGNBP2 
Exome Variant ServerGGNBP2
ExAC (Exome Aggregation Consortium)GGNBP2 (select the gene name)
Genetic variants : HAPMAP79893
Genomic Variants (DGV)GGNBP2 [DGVbeta]
DECIPHERGGNBP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGGNBP2 
Mutations
ICGC Data PortalGGNBP2 
TCGA Data PortalGGNBP2 
Broad Tumor PortalGGNBP2
OASIS PortalGGNBP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGGNBP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGGNBP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GGNBP2
DgiDB (Drug Gene Interaction Database)GGNBP2
DoCM (Curated mutations)GGNBP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GGNBP2 (select a term)
intoGenGGNBP2
Cancer3DGGNBP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612275   
Orphanet
MedgenGGNBP2
Genetic Testing Registry GGNBP2
NextProtQ9H3C7 [Medical]
TSGene79893
GENETestsGGNBP2
Huge Navigator GGNBP2 [HugePedia]
snp3D : Map Gene to Disease79893
BioCentury BCIQGGNBP2
ClinGenGGNBP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79893
Chemical/Pharm GKB GenePA162389409
Clinical trialGGNBP2
Miscellaneous
canSAR (ICR)GGNBP2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGGNBP2
EVEXGGNBP2
GoPubMedGGNBP2
iHOPGGNBP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:17:10 CEST 2017

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