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GINS3 (GINS complex subunit 3)

Identity

Alias_namesGINS complex subunit 3 (Psf3 homolog)
Alias_symbol (synonym)FLJ13912
PSF3
Other alias
HGNC (Hugo) GINS3
LocusID (NCBI) 64785
Atlas_Id 51419
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 58392394 and ends at 58406144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CUX1 (7q22.1) / GINS3 (16q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GINS3   25851
Cards
Entrez_Gene (NCBI)GINS3  64785  GINS complex subunit 3
AliasesPSF3
GeneCards (Weizmann)GINS3
Ensembl hg19 (Hinxton)ENSG00000181938 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181938 [Gene_View]  chr16:58392394-58406144 [Contig_View]  GINS3 [Vega]
ICGC DataPortalENSG00000181938
TCGA cBioPortalGINS3
AceView (NCBI)GINS3
Genatlas (Paris)GINS3
WikiGenes64785
SOURCE (Princeton)GINS3
Genetics Home Reference (NIH)GINS3
Genomic and cartography
GoldenPath hg38 (UCSC)GINS3  -     chr16:58392394-58406144 +  16q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GINS3  -     16q21   [Description]    (hg19-Feb_2009)
EnsemblGINS3 - 16q21 [CytoView hg19]  GINS3 - 16q21 [CytoView hg38]
Mapping of homologs : NCBIGINS3 [Mapview hg19]  GINS3 [Mapview hg38]
OMIM610610   
Gene and transcription
Genbank (Entrez)AK023974 AK127454 AK315622 AL137379 BC005879
RefSeq transcript (Entrez)NM_001126129 NM_001126130 NM_022770
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GINS3
Cluster EST : UnigeneHs.605546 [ NCBI ]
CGAP (NCI)Hs.605546
Alternative Splicing GalleryENSG00000181938
Gene ExpressionGINS3 [ NCBI-GEO ]   GINS3 [ EBI - ARRAY_EXPRESS ]   GINS3 [ SEEK ]   GINS3 [ MEM ]
Gene Expression Viewer (FireBrowse)GINS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64785
GTEX Portal (Tissue expression)GINS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRX5
Splice isoforms : SwissVarQ9BRX5
PhosPhoSitePlusQ9BRX5
Domains : Interpro (EBI)GINS_A    GINS_Psf3   
Domain families : Pfam (Sanger)Sld5 (PF05916)   
Domain families : Pfam (NCBI)pfam05916   
Conserved Domain (NCBI)GINS3
DMDM Disease mutations64785
Blocks (Seattle)GINS3
PDB (SRS)2E9X    2EHO    2Q9Q   
PDB (PDBSum)2E9X    2EHO    2Q9Q   
PDB (IMB)2E9X    2EHO    2Q9Q   
PDB (RSDB)2E9X    2EHO    2Q9Q   
Structural Biology KnowledgeBase2E9X    2EHO    2Q9Q   
SCOP (Structural Classification of Proteins)2E9X    2EHO    2Q9Q   
CATH (Classification of proteins structures)2E9X    2EHO    2Q9Q   
SuperfamilyQ9BRX5
Human Protein AtlasENSG00000181938
Peptide AtlasQ9BRX5
HPRD07842
IPIIPI00748700   IPI00185097   IPI00893172   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRX5
IntAct (EBI)Q9BRX5
FunCoupENSG00000181938
BioGRIDGINS3
STRING (EMBL)GINS3
ZODIACGINS3
Ontologies - Pathways
QuickGOQ9BRX5
Ontology : AmiGOnucleoplasm  nucleoplasm  DNA strand elongation involved in DNA replication  
Ontology : EGO-EBInucleoplasm  nucleoplasm  DNA strand elongation involved in DNA replication  
NDEx NetworkGINS3
Atlas of Cancer Signalling NetworkGINS3
Wikipedia pathwaysGINS3
Orthology - Evolution
OrthoDB64785
GeneTree (enSembl)ENSG00000181938
Phylogenetic Trees/Animal Genes : TreeFamGINS3
HOVERGENQ9BRX5
HOGENOMQ9BRX5
Homologs : HomoloGeneGINS3
Homology/Alignments : Family Browser (UCSC)GINS3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGINS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GINS3
dbVarGINS3
ClinVarGINS3
1000_GenomesGINS3 
Exome Variant ServerGINS3
ExAC (Exome Aggregation Consortium)GINS3 (select the gene name)
Genetic variants : HAPMAP64785
Genomic Variants (DGV)GINS3 [DGVbeta]
DECIPHERGINS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGINS3 
Mutations
ICGC Data PortalGINS3 
TCGA Data PortalGINS3 
Broad Tumor PortalGINS3
OASIS PortalGINS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGINS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGINS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GINS3
DgiDB (Drug Gene Interaction Database)GINS3
DoCM (Curated mutations)GINS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GINS3 (select a term)
intoGenGINS3
Cancer3DGINS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610610   
Orphanet
MedgenGINS3
Genetic Testing Registry GINS3
NextProtQ9BRX5 [Medical]
TSGene64785
GENETestsGINS3
Target ValidationGINS3
Huge Navigator GINS3 [HugePedia]
snp3D : Map Gene to Disease64785
BioCentury BCIQGINS3
ClinGenGINS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64785
Chemical/Pharm GKB GenePA145008327
Clinical trialGINS3
Miscellaneous
canSAR (ICR)GINS3 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGINS3
EVEXGINS3
GoPubMedGINS3
iHOPGINS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:09:49 CEST 2017

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