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GINS3 (GINS complex subunit 3)

Identity

Alias (NCBI)PSF3
HGNC (Hugo) GINS3
HGNC Alias symbFLJ13912
PSF3
HGNC Previous nameGINS complex subunit 3 (Psf3 homolog)
LocusID (NCBI) 64785
Atlas_Id 51419
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 58392471 and ends at 58406147 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CUX1 (7q22.1)::GINS3 (16q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GINS3   25851
Cards
Entrez_Gene (NCBI)GINS3    GINS complex subunit 3
AliasesPSF3
GeneCards (Weizmann)GINS3
Ensembl hg19 (Hinxton)ENSG00000181938 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181938 [Gene_View]  ENSG00000181938 [Sequence]  chr16:58392471-58406147 [Contig_View]  GINS3 [Vega]
ICGC DataPortalENSG00000181938
TCGA cBioPortalGINS3
AceView (NCBI)GINS3
Genatlas (Paris)GINS3
SOURCE (Princeton)GINS3
Genetics Home Reference (NIH)GINS3
Genomic and cartography
GoldenPath hg38 (UCSC)GINS3  -     chr16:58392471-58406147 +  16q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GINS3  -     16q21   [Description]    (hg19-Feb_2009)
GoldenPathGINS3 - 16q21 [CytoView hg19]  GINS3 - 16q21 [CytoView hg38]
ImmunoBaseENSG00000181938
Genome Data Viewer NCBIGINS3 [Mapview hg19]  
OMIM610610   
Gene and transcription
Genbank (Entrez)AK023974 AK127454 AK315622 AL137379 BC005879
RefSeq transcript (Entrez)NM_001126129 NM_001126130 NM_022770
Consensus coding sequences : CCDS (NCBI)GINS3
Gene ExpressionGINS3 [ NCBI-GEO ]   GINS3 [ EBI - ARRAY_EXPRESS ]   GINS3 [ SEEK ]   GINS3 [ MEM ]
Gene Expression Viewer (FireBrowse)GINS3 [ Firebrowse - Broad ]
GenevisibleExpression of GINS3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64785
GTEX Portal (Tissue expression)GINS3
Human Protein AtlasENSG00000181938-GINS3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRX5
PhosPhoSitePlusQ9BRX5
Domains : Interpro (EBI)GINS_A    GINS_bundle-like_dom_sf    GINS_Psf3    GINS_Psf3_sf   
Domain families : Pfam (Sanger)Sld5 (PF05916)   
Domain families : Pfam (NCBI)pfam05916   
Conserved Domain (NCBI)GINS3
PDB (RSDB)2E9X    2EHO    2Q9Q    6XTX    6XTY   
PDB Europe2E9X    2EHO    2Q9Q    6XTX    6XTY   
PDB (PDBSum)2E9X    2EHO    2Q9Q    6XTX    6XTY   
PDB (IMB)2E9X    2EHO    2Q9Q    6XTX    6XTY   
Structural Biology KnowledgeBase2E9X    2EHO    2Q9Q    6XTX    6XTY   
SCOP (Structural Classification of Proteins)2E9X    2EHO    2Q9Q    6XTX    6XTY   
CATH (Classification of proteins structures)2E9X    2EHO    2Q9Q    6XTX    6XTY   
SuperfamilyQ9BRX5
AlphaFold pdb e-kbQ9BRX5   
Human Protein Atlas [tissue]ENSG00000181938-GINS3 [tissue]
HPRD07842
Protein Interaction databases
DIP (DOE-UCLA)Q9BRX5
IntAct (EBI)Q9BRX5
BioGRIDGINS3
STRING (EMBL)GINS3
ZODIACGINS3
Ontologies - Pathways
QuickGOQ9BRX5
Ontology : AmiGOGINS complex  protein binding  nucleoplasm  nucleoplasm  DNA strand elongation involved in DNA replication  CMG complex  mitotic DNA replication initiation  
Ontology : EGO-EBIGINS complex  protein binding  nucleoplasm  nucleoplasm  DNA strand elongation involved in DNA replication  CMG complex  mitotic DNA replication initiation  
NDEx NetworkGINS3
Atlas of Cancer Signalling NetworkGINS3
Wikipedia pathwaysGINS3
Orthology - Evolution
OrthoDB64785
GeneTree (enSembl)ENSG00000181938
Phylogenetic Trees/Animal Genes : TreeFamGINS3
Homologs : HomoloGeneGINS3
Homology/Alignments : Family Browser (UCSC)GINS3
Gene fusions - Rearrangements
Fusion : QuiverGINS3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGINS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GINS3
dbVarGINS3
ClinVarGINS3
MonarchGINS3
1000_GenomesGINS3 
Exome Variant ServerGINS3
GNOMAD BrowserENSG00000181938
Varsome BrowserGINS3
ACMGGINS3 variants
VarityQ9BRX5
Genomic Variants (DGV)GINS3 [DGVbeta]
DECIPHERGINS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGINS3 
Mutations
ICGC Data PortalGINS3 
TCGA Data PortalGINS3 
Broad Tumor PortalGINS3
OASIS PortalGINS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGINS3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGINS3
Mutations and Diseases : HGMDGINS3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGINS3
DgiDB (Drug Gene Interaction Database)GINS3
DoCM (Curated mutations)GINS3
CIViC (Clinical Interpretations of Variants in Cancer)GINS3
Cancer3DGINS3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610610   
Orphanet
DisGeNETGINS3
MedgenGINS3
Genetic Testing Registry GINS3
NextProtQ9BRX5 [Medical]
GENETestsGINS3
Target ValidationGINS3
Huge Navigator GINS3 [HugePedia]
ClinGenGINS3
Clinical trials, drugs, therapy
MyCancerGenomeGINS3
Protein Interactions : CTDGINS3
Pharm GKB GenePA145008327
PharosQ9BRX5
Clinical trialGINS3
Miscellaneous
canSAR (ICR)GINS3
HarmonizomeGINS3
ARCHS4GINS3
DataMed IndexGINS3
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGINS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:12:23 CET 2022

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