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GLCE (glucuronic acid epimerase)

Identity

Alias_namesD-glucuronyl C5-epimerase
UDP-glucuronic acid epimerase
Alias_symbol (synonym)KIAA0836
HSEPI
Other alias
HGNC (Hugo) GLCE
LocusID (NCBI) 26035
Atlas_Id 50024
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 69160597 and ends at 69267638 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GLCE (15q23) / NOX5 (15q23)GLCE (15q23) / SPESP1 (15q23)GLCE 15q23 / NOX5 15q23
GLCE 15q23 / SPESP1 15q23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLCE   17855
Cards
Entrez_Gene (NCBI)GLCE  26035  glucuronic acid epimerase
AliasesHSEPI
GeneCards (Weizmann)GLCE
Ensembl hg19 (Hinxton)ENSG00000138604 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138604 [Gene_View]  chr15:69160597-69267638 [Contig_View]  GLCE [Vega]
ICGC DataPortalENSG00000138604
TCGA cBioPortalGLCE
AceView (NCBI)GLCE
Genatlas (Paris)GLCE
WikiGenes26035
SOURCE (Princeton)GLCE
Genetics Home Reference (NIH)GLCE
Genomic and cartography
GoldenPath hg38 (UCSC)GLCE  -     chr15:69160597-69267638 +  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLCE  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblGLCE - 15q23 [CytoView hg19]  GLCE - 15q23 [CytoView hg38]
Mapping of homologs : NCBIGLCE [Mapview hg19]  GLCE [Mapview hg38]
OMIM612134   
Gene and transcription
Genbank (Entrez)AA393928 AB020643 AK002188 AY635582 BC026096
RefSeq transcript (Entrez)NM_001324091 NM_001324092 NM_001324093 NM_001324094 NM_015554
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLCE
Cluster EST : UnigeneHs.183006 [ NCBI ]
CGAP (NCI)Hs.183006
Alternative Splicing GalleryENSG00000138604
Gene ExpressionGLCE [ NCBI-GEO ]   GLCE [ EBI - ARRAY_EXPRESS ]   GLCE [ SEEK ]   GLCE [ MEM ]
Gene Expression Viewer (FireBrowse)GLCE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26035
GTEX Portal (Tissue expression)GLCE
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94923   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94923  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94923
Splice isoforms : SwissVarO94923
PhosPhoSitePlusO94923
Domains : Interpro (EBI)C5-epim   
Domain families : Pfam (Sanger)C5-epim_C (PF06662)   
Domain families : Pfam (NCBI)pfam06662   
Conserved Domain (NCBI)GLCE
DMDM Disease mutations26035
Blocks (Seattle)GLCE
SuperfamilyO94923
Human Protein AtlasENSG00000138604
Peptide AtlasO94923
HPRD07020
IPIIPI00433284   
Protein Interaction databases
DIP (DOE-UCLA)O94923
IntAct (EBI)O94923
FunCoupENSG00000138604
BioGRIDGLCE
STRING (EMBL)GLCE
ZODIACGLCE
Ontologies - Pathways
QuickGOO94923
Ontology : AmiGOGolgi membrane  Golgi apparatus  heparan sulfate proteoglycan biosynthetic process  heparan sulfate proteoglycan biosynthetic process  heparan sulfate proteoglycan biosynthetic process  integral component of membrane  racemase and epimerase activity, acting on carbohydrates and derivatives  heparin biosynthetic process  heparin biosynthetic process  heparosan-N-sulfate-glucuronate 5-epimerase activity  UDP-glucuronate 5'-epimerase activity  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  heparan sulfate proteoglycan biosynthetic process  heparan sulfate proteoglycan biosynthetic process  heparan sulfate proteoglycan biosynthetic process  integral component of membrane  racemase and epimerase activity, acting on carbohydrates and derivatives  heparin biosynthetic process  heparin biosynthetic process  heparosan-N-sulfate-glucuronate 5-epimerase activity  UDP-glucuronate 5'-epimerase activity  
Pathways : KEGGGlycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkGLCE
Atlas of Cancer Signalling NetworkGLCE
Wikipedia pathwaysGLCE
Orthology - Evolution
OrthoDB26035
GeneTree (enSembl)ENSG00000138604
Phylogenetic Trees/Animal Genes : TreeFamGLCE
HOVERGENO94923
HOGENOMO94923
Homologs : HomoloGeneGLCE
Homology/Alignments : Family Browser (UCSC)GLCE
Gene fusions - Rearrangements
Fusion: TCGAGLCE 15q23 NOX5 15q23 BRCA
Fusion: TCGAGLCE 15q23 SPESP1 15q23 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLCE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLCE
dbVarGLCE
ClinVarGLCE
1000_GenomesGLCE 
Exome Variant ServerGLCE
ExAC (Exome Aggregation Consortium)GLCE (select the gene name)
Genetic variants : HAPMAP26035
Genomic Variants (DGV)GLCE [DGVbeta]
DECIPHERGLCE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLCE 
Mutations
ICGC Data PortalGLCE 
TCGA Data PortalGLCE 
Broad Tumor PortalGLCE
OASIS PortalGLCE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLCE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLCE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLCE
DgiDB (Drug Gene Interaction Database)GLCE
DoCM (Curated mutations)GLCE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLCE (select a term)
intoGenGLCE
Cancer3DGLCE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612134   
Orphanet
MedgenGLCE
Genetic Testing Registry GLCE
NextProtO94923 [Medical]
TSGene26035
GENETestsGLCE
Target ValidationGLCE
Huge Navigator GLCE [HugePedia]
snp3D : Map Gene to Disease26035
BioCentury BCIQGLCE
ClinGenGLCE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26035
Chemical/Pharm GKB GenePA145148750
Clinical trialGLCE
Miscellaneous
canSAR (ICR)GLCE (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLCE
EVEXGLCE
GoPubMedGLCE
iHOPGLCE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:35:20 CEST 2017

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