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GOLGB1 (golgin B1)

Identity

Alias_namesgolgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1
golgin B1, golgi integral membrane protein
Alias_symbol (synonym)GCP
GCP372
giantin
GOLIM1
Other alias
HGNC (Hugo) GOLGB1
LocusID (NCBI) 2804
Atlas_Id 54336
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 121382046 and ends at 121468614 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKRD11 (16q24.3) / GOLGB1 (3q13.33)CEP63 (3q22.2) / GOLGB1 (3q13.33)CNOT8 (5q33.2) / GOLGB1 (3q13.33)
F11R (1q23.3) / GOLGB1 (3q13.33)GOLGB1 (3q13.33) / ATG5 (6q21)GOLGB1 (3q13.33) / CCDC58 (3q21.1)
GOLGB1 (3q13.33) / ILDR1 (3q13.33)GOLGB1 (3q13.33) / IQCB1 (3q13.33)GOLGB1 (3q13.33) / PDGFRB (5q32)
NCOA1 (2p23.3) / GOLGB1 (3q13.33)RAP1GAP (1p36.12) / GOLGB1 (3q13.33)RBM39 (20q11.22) / GOLGB1 (3q13.33)
GOLGB1 3q13.33 / CCDC58 3q21.1GOLGB1 3q13.33 / IQCB1 3q13.33NCOA1 2p23.3 / GOLGB1 3q13.33
RAP1GAP 1p36.12 / GOLGB1 3q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGB1   4429
Cards
Entrez_Gene (NCBI)GOLGB1  2804  golgin B1
AliasesGCP; GCP372; GOLIM1
GeneCards (Weizmann)GOLGB1
Ensembl hg19 (Hinxton)ENSG00000173230 [Gene_View]  chr3:121382046-121468614 [Contig_View]  GOLGB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000173230 [Gene_View]  chr3:121382046-121468614 [Contig_View]  GOLGB1 [Vega]
ICGC DataPortalENSG00000173230
TCGA cBioPortalGOLGB1
AceView (NCBI)GOLGB1
Genatlas (Paris)GOLGB1
WikiGenes2804
SOURCE (Princeton)GOLGB1
Genetics Home Reference (NIH)GOLGB1
Genomic and cartography
GoldenPath hg19 (UCSC)GOLGB1  -     chr3:121382046-121468614 -  3q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GOLGB1  -     3q13.33   [Description]    (hg38-Dec_2013)
EnsemblGOLGB1 - 3q13.33 [CytoView hg19]  GOLGB1 - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBIGOLGB1 [Mapview hg19]  GOLGB1 [Mapview hg38]
OMIM602500   
Gene and transcription
Genbank (Entrez)AA127633 AB371588 AB593126 AK094551 AK296903
RefSeq transcript (Entrez)NM_001256486 NM_001256487 NM_001256488 NM_004487
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)GOLGB1
Cluster EST : UnigeneHs.741209 [ NCBI ]
CGAP (NCI)Hs.741209
Alternative Splicing GalleryENSG00000173230
Gene ExpressionGOLGB1 [ NCBI-GEO ]   GOLGB1 [ EBI - ARRAY_EXPRESS ]   GOLGB1 [ SEEK ]   GOLGB1 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2804
GTEX Portal (Tissue expression)GOLGB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14789   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14789  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14789
Splice isoforms : SwissVarQ14789
PhosPhoSitePlusQ14789
Domains : Interpro (EBI)GOLGB1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GOLGB1
DMDM Disease mutations2804
Blocks (Seattle)GOLGB1
SuperfamilyQ14789
Human Protein AtlasENSG00000173230
Peptide AtlasQ14789
HPRD03933
IPIIPI00004671   IPI00909600   IPI00908744   IPI00796891   IPI00945050   IPI00945169   IPI00947450   IPI00946934   
Protein Interaction databases
DIP (DOE-UCLA)Q14789
IntAct (EBI)Q14789
FunCoupENSG00000173230
BioGRIDGOLGB1
STRING (EMBL)GOLGB1
ZODIACGOLGB1
Ontologies - Pathways
QuickGOQ14789
Ontology : AmiGOGolgi membrane  transcription factor activity, sequence-specific DNA binding  protein binding  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  Golgi stack  cis-Golgi network  regulation of transcription, DNA-templated  ER to Golgi vesicle-mediated transport  Golgi organization  membrane  integral component of membrane  sequence-specific DNA binding  poly(A) RNA binding  
Ontology : EGO-EBIGolgi membrane  transcription factor activity, sequence-specific DNA binding  protein binding  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  Golgi stack  cis-Golgi network  regulation of transcription, DNA-templated  ER to Golgi vesicle-mediated transport  Golgi organization  membrane  integral component of membrane  sequence-specific DNA binding  poly(A) RNA binding  
NDEx NetworkGOLGB1
Atlas of Cancer Signalling NetworkGOLGB1
Wikipedia pathwaysGOLGB1
Orthology - Evolution
OrthoDB2804
GeneTree (enSembl)ENSG00000173230
Phylogenetic Trees/Animal Genes : TreeFamGOLGB1
HOVERGENQ14789
HOGENOMQ14789
Homologs : HomoloGeneGOLGB1
Homology/Alignments : Family Browser (UCSC)GOLGB1
Gene fusions - Rearrangements
Fusion : MitelmanGOLGB1/CCDC58 [3q13.33/3q21.1]  
Fusion : MitelmanGOLGB1/ILDR1 [3q13.33/3q13.33]  [t(3;3)(q13;q13)]  
Fusion : MitelmanGOLGB1/IQCB1 [3q13.33/3q13.33]  [t(3;3)(q13;q13)]  
Fusion : MitelmanNCOA1/GOLGB1 [2p23.3/3q13.33]  [t(2;3)(p23;q13)]  
Fusion : MitelmanRAP1GAP/GOLGB1 [1p36.12/3q13.33]  [t(1;3)(p36;q13)]  
Fusion: TCGAGOLGB1 3q13.33 CCDC58 3q21.1 BRCA
Fusion: TCGAGOLGB1 3q13.33 IQCB1 3q13.33 BRCA
Fusion: TCGANCOA1 2p23.3 GOLGB1 3q13.33 BRCA
Fusion: TCGARAP1GAP 1p36.12 GOLGB1 3q13.33 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGB1
dbVarGOLGB1
ClinVarGOLGB1
1000_GenomesGOLGB1 
Exome Variant ServerGOLGB1
ExAC (Exome Aggregation Consortium)GOLGB1 (select the gene name)
Genetic variants : HAPMAP2804
Genomic Variants (DGV)GOLGB1 [DGVbeta]
DECIPHER (Syndromes)3:121382046-121468614  ENSG00000173230
CONAN: Copy Number AnalysisGOLGB1 
Mutations
ICGC Data PortalGOLGB1 
TCGA Data PortalGOLGB1 
Broad Tumor PortalGOLGB1
OASIS PortalGOLGB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGB1
DgiDB (Drug Gene Interaction Database)GOLGB1
DoCM (Curated mutations)GOLGB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGB1 (select a term)
intoGenGOLGB1
Cancer3DGOLGB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602500   
Orphanet
MedgenGOLGB1
Genetic Testing Registry GOLGB1
NextProtQ14789 [Medical]
TSGene2804
GENETestsGOLGB1
Huge Navigator GOLGB1 [HugePedia]
snp3D : Map Gene to Disease2804
BioCentury BCIQGOLGB1
ClinGenGOLGB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2804
Chemical/Pharm GKB GenePA28810
Clinical trialGOLGB1
Miscellaneous
canSAR (ICR)GOLGB1 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGB1
EVEXGOLGB1
GoPubMedGOLGB1
iHOPGOLGB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:07:52 CET 2017

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