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HAS3 (hyaluronan synthase 3)

Identity

Other alias-
HGNC (Hugo) HAS3
LocusID (NCBI) 3038
Atlas_Id 46583
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 69139467 and ends at 69151570 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HAS3   4820
Cards
Entrez_Gene (NCBI)HAS3  3038  hyaluronan synthase 3
Aliases
GeneCards (Weizmann)HAS3
Ensembl hg19 (Hinxton)ENSG00000103044 [Gene_View]  chr16:69139467-69151570 [Contig_View]  HAS3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103044 [Gene_View]  chr16:69139467-69151570 [Contig_View]  HAS3 [Vega]
ICGC DataPortalENSG00000103044
TCGA cBioPortalHAS3
AceView (NCBI)HAS3
Genatlas (Paris)HAS3
WikiGenes3038
SOURCE (Princeton)HAS3
Genetics Home Reference (NIH)HAS3
Genomic and cartography
GoldenPath hg19 (UCSC)HAS3  -     chr16:69139467-69151570 +  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HAS3  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblHAS3 - 16q22.1 [CytoView hg19]  HAS3 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIHAS3 [Mapview hg19]  HAS3 [Mapview hg38]
OMIM602428   
Gene and transcription
Genbank (Entrez)AF232772 AF234839 AK291400 AW294351 BC021853
RefSeq transcript (Entrez)NM_001199280 NM_005329 NM_138612
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)HAS3
Cluster EST : UnigeneHs.592069 [ NCBI ]
CGAP (NCI)Hs.592069
Alternative Splicing GalleryENSG00000103044
Gene ExpressionHAS3 [ NCBI-GEO ]   HAS3 [ EBI - ARRAY_EXPRESS ]   HAS3 [ SEEK ]   HAS3 [ MEM ]
Gene Expression Viewer (FireBrowse)HAS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3038
GTEX Portal (Tissue expression)HAS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00219   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00219  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00219
Splice isoforms : SwissVarO00219
Catalytic activity : Enzyme2.4.1.212 [ Enzyme-Expasy ]   2.4.1.2122.4.1.212 [ IntEnz-EBI ]   2.4.1.212 [ BRENDA ]   2.4.1.212 [ KEGG ]   
PhosPhoSitePlusO00219
Domains : Interpro (EBI)HA_synthase_3    HAS/NodC    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HAS3
DMDM Disease mutations3038
Blocks (Seattle)HAS3
SuperfamilyO00219
Human Protein AtlasENSG00000103044
Peptide AtlasO00219
HPRD03889
IPIIPI00297981   IPI00102869   
Protein Interaction databases
DIP (DOE-UCLA)O00219
IntAct (EBI)O00219
FunCoupENSG00000103044
BioGRIDHAS3
STRING (EMBL)HAS3
ZODIACHAS3
Ontologies - Pathways
QuickGOO00219
Ontology : AmiGOcytoplasm  plasma membrane  integral component of plasma membrane  carbohydrate metabolic process  cell adhesion  integral component of membrane  hyaluronan biosynthetic process  hyaluronan biosynthetic process  hyaluronan biosynthetic process  hyaluranon cable  extracellular polysaccharide biosynthetic process  extracellular polysaccharide biosynthetic process  positive regulation of transcription, DNA-templated  hyaluronan synthase activity  hyaluronan synthase activity  extracellular matrix assembly  extracellular matrix assembly  positive regulation of hyaluranon cable assembly  
Ontology : EGO-EBIcytoplasm  plasma membrane  integral component of plasma membrane  carbohydrate metabolic process  cell adhesion  integral component of membrane  hyaluronan biosynthetic process  hyaluronan biosynthetic process  hyaluronan biosynthetic process  hyaluranon cable  extracellular polysaccharide biosynthetic process  extracellular polysaccharide biosynthetic process  positive regulation of transcription, DNA-templated  hyaluronan synthase activity  hyaluronan synthase activity  extracellular matrix assembly  extracellular matrix assembly  positive regulation of hyaluranon cable assembly  
NDEx NetworkHAS3
Atlas of Cancer Signalling NetworkHAS3
Wikipedia pathwaysHAS3
Orthology - Evolution
OrthoDB3038
GeneTree (enSembl)ENSG00000103044
Phylogenetic Trees/Animal Genes : TreeFamHAS3
HOVERGENO00219
HOGENOMO00219
Homologs : HomoloGeneHAS3
Homology/Alignments : Family Browser (UCSC)HAS3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHAS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HAS3
dbVarHAS3
ClinVarHAS3
1000_GenomesHAS3 
Exome Variant ServerHAS3
ExAC (Exome Aggregation Consortium)HAS3 (select the gene name)
Genetic variants : HAPMAP3038
Genomic Variants (DGV)HAS3 [DGVbeta]
DECIPHER (Syndromes)16:69139467-69151570  ENSG00000103044
CONAN: Copy Number AnalysisHAS3 
Mutations
ICGC Data PortalHAS3 
TCGA Data PortalHAS3 
Broad Tumor PortalHAS3
OASIS PortalHAS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHAS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHAS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HAS3
DgiDB (Drug Gene Interaction Database)HAS3
DoCM (Curated mutations)HAS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HAS3 (select a term)
intoGenHAS3
Cancer3DHAS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602428   
Orphanet
MedgenHAS3
Genetic Testing Registry HAS3
NextProtO00219 [Medical]
TSGene3038
GENETestsHAS3
Huge Navigator HAS3 [HugePedia]
snp3D : Map Gene to Disease3038
BioCentury BCIQHAS3
ClinGenHAS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3038
Chemical/Pharm GKB GenePA29196
Clinical trialHAS3
Miscellaneous
canSAR (ICR)HAS3 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHAS3
EVEXHAS3
GoPubMedHAS3
iHOPHAS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:08:36 CET 2017

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