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HILPDA (hypoxia inducible lipid droplet associated)

Identity

Alias_namesC7orf68
chromosome 7 open reading frame 68
hypoxia inducible lipid droplet-associated
Alias_symbol (synonym)FLJ21076
HIG-2
HIG2
Other alias
HGNC (Hugo) HILPDA
LocusID (NCBI) 29923
Atlas_Id 51494
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 128455830 and ends at 128458418 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
VGLL4 (3p25.3) / HILPDA (7q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HILPDA   28859
Cards
Entrez_Gene (NCBI)HILPDA  29923  hypoxia inducible lipid droplet associated
AliasesC7orf68; HIG-2; HIG2
GeneCards (Weizmann)HILPDA
Ensembl hg19 (Hinxton)ENSG00000135245 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135245 [Gene_View]  chr7:128455830-128458418 [Contig_View]  HILPDA [Vega]
ICGC DataPortalENSG00000135245
TCGA cBioPortalHILPDA
AceView (NCBI)HILPDA
Genatlas (Paris)HILPDA
WikiGenes29923
SOURCE (Princeton)HILPDA
Genetics Home Reference (NIH)HILPDA
Genomic and cartography
GoldenPath hg38 (UCSC)HILPDA  -     chr7:128455830-128458418 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HILPDA  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblHILPDA - 7q32.1 [CytoView hg19]  HILPDA - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBIHILPDA [Mapview hg19]  HILPDA [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF144755 AK024729 AK222583 AL691669 BC001863
RefSeq transcript (Entrez)NM_001098786 NM_013332
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HILPDA
Cluster EST : UnigeneHs.706124 [ NCBI ]
CGAP (NCI)Hs.706124
Alternative Splicing GalleryENSG00000135245
Gene ExpressionHILPDA [ NCBI-GEO ]   HILPDA [ EBI - ARRAY_EXPRESS ]   HILPDA [ SEEK ]   HILPDA [ MEM ]
Gene Expression Viewer (FireBrowse)HILPDA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29923
GTEX Portal (Tissue expression)HILPDA
Human Protein AtlasENSG00000135245-HILPDA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5L2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5L2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5L2
Splice isoforms : SwissVarQ9Y5L2
PhosPhoSitePlusQ9Y5L2
Domains : Interpro (EBI)Hipoxia_HILPDA   
Domain families : Pfam (Sanger)HILPDA (PF15220)   
Domain families : Pfam (NCBI)pfam15220   
Conserved Domain (NCBI)HILPDA
DMDM Disease mutations29923
Blocks (Seattle)HILPDA
SuperfamilyQ9Y5L2
Human Protein Atlas [tissue]ENSG00000135245-HILPDA [tissue]
Peptide AtlasQ9Y5L2
HPRD17105
IPIIPI00001583   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5L2
IntAct (EBI)Q9Y5L2
FunCoupENSG00000135245
BioGRIDHILPDA
STRING (EMBL)HILPDA
ZODIACHILPDA
Ontologies - Pathways
QuickGOQ9Y5L2
Ontology : AmiGOpositive regulation of cytokine production  receptor binding  protein binding  extracellular space  nucleoplasm  lipid particle  cytosol  response to stress  positive regulation of cell proliferation  cell surface  positive regulation of lipid storage  integral component of membrane  secretory granule  autocrine signaling  
Ontology : EGO-EBIpositive regulation of cytokine production  receptor binding  protein binding  extracellular space  nucleoplasm  lipid particle  cytosol  response to stress  positive regulation of cell proliferation  cell surface  positive regulation of lipid storage  integral component of membrane  secretory granule  autocrine signaling  
NDEx NetworkHILPDA
Atlas of Cancer Signalling NetworkHILPDA
Wikipedia pathwaysHILPDA
Orthology - Evolution
OrthoDB29923
GeneTree (enSembl)ENSG00000135245
Phylogenetic Trees/Animal Genes : TreeFamHILPDA
HOVERGENQ9Y5L2
HOGENOMQ9Y5L2
Homologs : HomoloGeneHILPDA
Homology/Alignments : Family Browser (UCSC)HILPDA
Gene fusions - Rearrangements
Tumor Fusion PortalHILPDA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHILPDA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HILPDA
dbVarHILPDA
ClinVarHILPDA
1000_GenomesHILPDA 
Exome Variant ServerHILPDA
ExAC (Exome Aggregation Consortium)ENSG00000135245
GNOMAD BrowserENSG00000135245
Genetic variants : HAPMAP29923
Genomic Variants (DGV)HILPDA [DGVbeta]
DECIPHERHILPDA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHILPDA 
Mutations
ICGC Data PortalHILPDA 
TCGA Data PortalHILPDA 
Broad Tumor PortalHILPDA
OASIS PortalHILPDA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHILPDA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HILPDA
DgiDB (Drug Gene Interaction Database)HILPDA
DoCM (Curated mutations)HILPDA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HILPDA (select a term)
intoGenHILPDA
Cancer3DHILPDA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHILPDA
MedgenHILPDA
Genetic Testing Registry HILPDA
NextProtQ9Y5L2 [Medical]
TSGene29923
GENETestsHILPDA
Target ValidationHILPDA
Huge Navigator HILPDA [HugePedia]
snp3D : Map Gene to Disease29923
BioCentury BCIQHILPDA
ClinGenHILPDA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29923
Chemical/Pharm GKB GenePA164717457
Clinical trialHILPDA
Miscellaneous
canSAR (ICR)HILPDA (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHILPDA
EVEXHILPDA
GoPubMedHILPDA
iHOPHILPDA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:16:07 CET 2017

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