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HTR1D (5-hydroxytryptamine receptor 1D)

Identity

Other names5-HT1D
HT1DA
HTR1DA
HTRL
RDC4
HGNC (Hugo) HTR1D
LocusID (NCBI) 3352
Atlas_Id 40898
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 23518388 and ends at 23521222 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HTR1D   5289
Cards
Entrez_Gene (NCBI)HTR1D  3352  5-hydroxytryptamine receptor 1D
Aliases5-HT1D; HT1DA; HTR1DA; HTRL; 
RDC4
GeneCards (Weizmann)HTR1D
Ensembl hg19 (Hinxton)ENSG00000179546 [Gene_View]  chr1:23518388-23521222 [Contig_View]  HTR1D [Vega]
Ensembl hg38 (Hinxton)ENSG00000179546 [Gene_View]  chr1:23518388-23521222 [Contig_View]  HTR1D [Vega]
ICGC DataPortalENSG00000179546
TCGA cBioPortalHTR1D
AceView (NCBI)HTR1D
Genatlas (Paris)HTR1D
WikiGenes3352
SOURCE (Princeton)HTR1D
Genomic and cartography
GoldenPath hg19 (UCSC)HTR1D  -     chr1:23518388-23521222 -  1p36.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HTR1D  -     1p36.12   [Description]    (hg38-Dec_2013)
EnsemblHTR1D - 1p36.12 [CytoView hg19]  HTR1D - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIHTR1D [Mapview hg19]  HTR1D [Mapview hg38]
OMIM182133   
Gene and transcription
Genbank (Entrez)AF498979 BC007720 BT007027 DQ893875 EU176172
RefSeq transcript (Entrez)NM_000864
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)HTR1D
Cluster EST : UnigeneHs.121482 [ NCBI ]
CGAP (NCI)Hs.121482
Alternative Splicing GalleryENSG00000179546
Gene ExpressionHTR1D [ NCBI-GEO ]   HTR1D [ EBI - ARRAY_EXPRESS ]   HTR1D [ SEEK ]   HTR1D [ MEM ]
Gene Expression Viewer (FireBrowse)HTR1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3352
GTEX Portal (Tissue expression)HTR1D
Protein : pattern, domain, 3D structure
UniProt/SwissProtP28221 (Uniprot)
NextProtP28221  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP28221
Splice isoforms : SwissVarP28221 (Swissvar)
PhosPhoSitePlusP28221
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)5HT1D_rcpt    5HT_rcpt    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations3352
Blocks (Seattle)HTR1D
SuperfamilyP28221
Human Protein AtlasENSG00000179546
Peptide AtlasP28221
HPRD01636
IPIIPI00002183   
Protein Interaction databases
DIP (DOE-UCLA)P28221
IntAct (EBI)P28221
FunCoupENSG00000179546
BioGRIDHTR1D
STRING (EMBL)HTR1D
ZODIACHTR1D
Ontologies - Pathways
QuickGOP28221
Ontology : AmiGOG-protein coupled serotonin receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway  serotonin receptor signaling pathway  serotonin receptor signaling pathway  serotonin receptor signaling pathway  synaptic transmission  response to toxic substance  intestine smooth muscle contraction  regulation of locomotion  vasoconstriction  regulation of behavior  serotonin binding  
Ontology : EGO-EBIG-protein coupled serotonin receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway  serotonin receptor signaling pathway  serotonin receptor signaling pathway  serotonin receptor signaling pathway  synaptic transmission  response to toxic substance  intestine smooth muscle contraction  regulation of locomotion  vasoconstriction  regulation of behavior  serotonin binding  
Pathways : KEGGNeuroactive ligand-receptor interaction    Serotonergic synapse   
NDEx NetworkHTR1D
Atlas of Cancer Signalling NetworkHTR1D
Wikipedia pathwaysHTR1D
Orthology - Evolution
OrthoDB3352
GeneTree (enSembl)ENSG00000179546
Phylogenetic Trees/Animal Genes : TreeFamHTR1D
Homologs : HomoloGeneHTR1D
Homology/Alignments : Family Browser (UCSC)HTR1D
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHTR1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HTR1D
dbVarHTR1D
ClinVarHTR1D
1000_GenomesHTR1D 
Exome Variant ServerHTR1D
ExAC (Exome Aggregation Consortium)HTR1D (select the gene name)
Genetic variants : HAPMAP3352
Genomic Variants (DGV)HTR1D [DGVbeta]
Mutations
ICGC Data PortalHTR1D 
TCGA Data PortalHTR1D 
Broad Tumor PortalHTR1D
OASIS PortalHTR1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHTR1D 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HTR1D
DgiDB (Drug Gene Interaction Database)HTR1D
DoCM (Curated mutations)HTR1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HTR1D (select a term)
intoGenHTR1D
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:23518388-23521222  ENSG00000179546
CONAN: Copy Number AnalysisHTR1D 
Mutations and Diseases : HGMDHTR1D
OMIM182133   
MedgenHTR1D
Genetic Testing Registry HTR1D
NextProtP28221 [Medical]
TSGene3352
GENETestsHTR1D
Huge Navigator HTR1D [HugePedia]
snp3D : Map Gene to Disease3352
BioCentury BCIQHTR1D
ClinGenHTR1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3352
Chemical/Pharm GKB GenePA29550
Clinical trialHTR1D
Miscellaneous
canSAR (ICR)HTR1D (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHTR1D
EVEXHTR1D
GoPubMedHTR1D
iHOPHTR1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:54:00 CEST 2016

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