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HTR1D (5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled)

Identity

Other names5-HT1D
HT1DA
HTR1DA
HTRL
RDC4
HGNC (Hugo) HTR1D
LocusID (NCBI) 3352
Location 1p36.12
Location_base_pair Starts at 23518388 and ends at 23521222 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HTR1D   5289
Entrez_Gene (NCBI)HTR1D  3352  5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled
Cards
GeneCards (Weizmann)HTR1D
Ensembl (Hinxton)ENSG00000179546 [Gene_View]  chr1:23518388-23521222 [Contig_View]  HTR1D [Vega]
AceView (NCBI)HTR1D
Genatlas (Paris)HTR1D
SOURCE (Stanford)NM_000864
Genomic and cartography
GoldenPath (UCSC)HTR1D  -  1p36.12   chr1:23518388-23521222 -  1p36.12   [Description]    (hg19-Feb_2009)
EnsemblHTR1D - 1p36.12 [CytoView]
Mapping of homologs : NCBIHTR1D [Mapview]
OMIM182133   
Gene and transcription
Genbank (Entrez)AF498979 BC007720 BT007027 DQ893875 EU176172
RefSeq transcript (SRS)NM_000864
RefSeq transcript (Entrez)NM_000864
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_004610 NW_001838573 NW_004077990
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004610 NW_001838573 NW_004077990
Consensus coding sequences : CCDS (NCBI)HTR1D
Cluster EST : UnigeneHs.121482 [ SRS ] Hs.121482 [ NCBI ]
CGAP (NCI)Hs.121482
Alternative Splicing : Fast-db (Paris)GSHG0001842
Alternative Splicing GalleryENSG00000179546
Gene ExpressionHTR1D [ NCBI-GEO ]   HTR1D [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP28221 (SRS) P28221 (Uniprot)
NextProtP28221
With graphics : InterProP28221
Splice isoforms : SwissVarP28221(Swissvar)
Domaine pattern : Prosite (SRS)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (SRS)5HT1D_rcpt    5HT_rcpt    7TM_GPCR_Rhodpsn    GPCR_Rhodpsn_supfam   
Domains : Interpro (EBI)5HT1D_rcpt    5HT_rcpt    7TM_GPCR_Rhodpsn    GPCR_Rhodpsn_supfam   
Related proteins : CluSTrP28221
Domain families : Pfam (SRS)7tm_1 (PF00001)   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM3352
Blocks (Seattle)P28221
Human Protein AtlasENSG00000179546
HPRD01636
IPIIPI00002183   
Protein Interaction databases
DIP (DOE-UCLA)P28221
IntAct (EBI)P28221
FunCoupENSG00000179546
REACTOMEHTR1D
Protein Interaction Database3352
BioGRIDHTR1D
InParanoidP28221
Interologous Interaction database P28221
IntegromeDBHTR1D
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HTR1D
SNP (GeneSNP Utah)HTR1D
SNP : HGBaseHTR1D
Genetic variants : HAPMAPHTR1D
Somatic Mutations in Cancer : COSMICHTR1D 
CONAN: Copy Number AnalysisHTR1D 
Mutations and Diseases : HGMDHTR1D
OMIM182133   
GENETests182133   
Disease Genetic AssociationHTR1D
Huge Navigator HTR1D [HugePedia]  HTR1D [HugeCancerGEM]
Genomic VariantsHTR1D  HTR1D [DGVbeta]
snp3D : Map Gene to Disease3352
General knowledge
Homologs : HomoloGeneHTR1D
Homology/Alignments : Family Browser (UCSC)HTR1D
Phylogenetic Trees/Animal Genes : TreeFamHTR1D
Chemical/Protein Interactions : CTD3352
Chemical/Pharm GKB GenePA29550
Clinical trialHTR1D
Cancer Resource (Charite)ENSG00000179546
Ontology : AmiGOserotonin receptor activity  plasma membrane  integral to plasma membrane  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  synaptic transmission  response to toxin  intestine smooth muscle contraction  serotonin binding  
Ontology : EGO-EBIserotonin receptor activity  plasma membrane  integral to plasma membrane  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  synaptic transmission  response to toxin  intestine smooth muscle contraction  serotonin binding  
Pathways : KEGGNeuroactive ligand-receptor interaction
Other databases
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
PubGeneHTR1D
iHOPHTR1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:30:50 CEST 2013
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