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HTR1D (5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled)

Identity

Other names5-HT1D
HT1DA
HTR1DA
HTRL
RDC4
HGNC (Hugo) HTR1D
LocusID (NCBI) 3352
Location 1p36.12
Location_base_pair Starts at 23518388 and ends at 23521222 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HTR1D   5289
Cards
Entrez_Gene (NCBI)HTR1D  3352  5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled
GeneCards (Weizmann)HTR1D
Ensembl hg19 (Hinxton)ENSG00000179546 [Gene_View]  chr1:23518388-23521222 [Contig_View]  HTR1D [Vega]
Ensembl hg38 (Hinxton)ENSG00000179546 [Gene_View]  chr1:23518388-23521222 [Contig_View]  HTR1D [Vega]
ICGC DataPortalENSG00000179546
cBioPortalHTR1D
AceView (NCBI)HTR1D
Genatlas (Paris)HTR1D
WikiGenes3352
SOURCE (Princeton)HTR1D
Genomic and cartography
GoldenPath hg19 (UCSC)HTR1D  -     chr1:23518388-23521222 -  1p36.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HTR1D  -     1p36.12   [Description]    (hg38-Dec_2013)
EnsemblHTR1D - 1p36.12 [CytoView hg19]  HTR1D - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIHTR1D [Mapview hg19]  HTR1D [Mapview hg38]
OMIM182133   
Gene and transcription
Genbank (Entrez)AF498979 BC007720 BT007027 DQ893875 EU176172
RefSeq transcript (Entrez)NM_000864
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838573 NW_004929289
Consensus coding sequences : CCDS (NCBI)HTR1D
Cluster EST : UnigeneHs.121482 [ NCBI ]
CGAP (NCI)Hs.121482
Alternative Splicing : Fast-db (Paris)GSHG0001842
Alternative Splicing GalleryENSG00000179546
Gene ExpressionHTR1D [ NCBI-GEO ]     HTR1D [ SEEK ]   HTR1D [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP28221 (Uniprot)
NextProtP28221  [Medical]
With graphics : InterProP28221
Splice isoforms : SwissVarP28221 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)5HT1D_rcpt    5HT_rcpt    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Related proteins : CluSTrP28221
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations3352
Blocks (Seattle)P28221
Human Protein AtlasENSG00000179546
Peptide AtlasP28221
HPRD01636
IPIIPI00002183   
Protein Interaction databases
DIP (DOE-UCLA)P28221
IntAct (EBI)P28221
FunCoupENSG00000179546
BioGRIDHTR1D
IntegromeDBHTR1D
STRING (EMBL)HTR1D
Ontologies - Pathways
QuickGOP28221
Ontology : AmiGOserotonin receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway  serotonin receptor signaling pathway  synaptic transmission  response to toxic substance  intestine smooth muscle contraction  regulation of locomotion  vasoconstriction  regulation of behavior  serotonin binding  
Ontology : EGO-EBIserotonin receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway  serotonin receptor signaling pathway  synaptic transmission  response to toxic substance  intestine smooth muscle contraction  regulation of locomotion  vasoconstriction  regulation of behavior  serotonin binding  
Pathways : KEGGNeuroactive ligand-receptor interaction    Serotonergic synapse   
Protein Interaction DatabaseHTR1D
DoCM (Curated mutations)HTR1D
Wikipedia pathwaysHTR1D
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHTR1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HTR1D
dbVarHTR1D
ClinVarHTR1D
1000_GenomesHTR1D 
Exome Variant ServerHTR1D
SNP (GeneSNP Utah)HTR1D
SNP : HGBaseHTR1D
Genetic variants : HAPMAPHTR1D
Genomic VariantsHTR1D  HTR1D [DGVbeta]
Mutations
ICGC Data PortalENSG00000179546 
Somatic Mutations in Cancer : COSMICHTR1D 
CONAN: Copy Number AnalysisHTR1D 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:23518388-23521222
Mutations and Diseases : HGMDHTR1D
OMIM182133   
MedgenHTR1D
NextProtP28221 [Medical]
GENETestsHTR1D
Disease Genetic AssociationHTR1D
Huge Navigator HTR1D [HugePedia]  HTR1D [HugeCancerGEM]
snp3D : Map Gene to Disease3352
DGIdb (Drug Gene Interaction db)HTR1D
General knowledge
Homologs : HomoloGeneHTR1D
Homology/Alignments : Family Browser (UCSC)HTR1D
Phylogenetic Trees/Animal Genes : TreeFamHTR1D
Chemical/Protein Interactions : CTD3352
Chemical/Pharm GKB GenePA29550
Clinical trialHTR1D
Cancer Resource (Charite)ENSG00000179546
Other databases
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
CoreMineHTR1D
GoPubMedHTR1D
iHOPHTR1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 22:05:17 CET 2014

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