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ICAM3 (intercellular adhesion molecule 3)

Identity

Alias_symbol (synonym)CDW50
ICAM-R
CD50
Other alias
HGNC (Hugo) ICAM3
LocusID (NCBI) 3385
Atlas_Id 40911
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10333776 and ends at 10339834 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DNMT1 (19p13.2) / ICAM3 (19p13.2)DNMT1 19p13.2 / ICAM3 19p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ICAM3   5346
Cards
Entrez_Gene (NCBI)ICAM3  3385  intercellular adhesion molecule 3
AliasesCD50; CDW50; ICAM-R
GeneCards (Weizmann)ICAM3
Ensembl hg19 (Hinxton)ENSG00000076662 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000076662 [Gene_View]  chr19:10333776-10339834 [Contig_View]  ICAM3 [Vega]
ICGC DataPortalENSG00000076662
TCGA cBioPortalICAM3
AceView (NCBI)ICAM3
Genatlas (Paris)ICAM3
WikiGenes3385
SOURCE (Princeton)ICAM3
Genetics Home Reference (NIH)ICAM3
Genomic and cartography
GoldenPath hg38 (UCSC)ICAM3  -     chr19:10333776-10339834 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ICAM3  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblICAM3 - 19p13.2 [CytoView hg19]  ICAM3 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIICAM3 [Mapview hg19]  ICAM3 [Mapview hg38]
OMIM146631   
Gene and transcription
Genbank (Entrez)AF340060 AF340061 AK226023 AK301071 AK309643
RefSeq transcript (Entrez)NM_001320605 NM_001320606 NM_001320608 NM_002162
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ICAM3
Cluster EST : UnigeneHs.654563 [ NCBI ]
CGAP (NCI)Hs.654563
Alternative Splicing GalleryENSG00000076662
Gene ExpressionICAM3 [ NCBI-GEO ]   ICAM3 [ EBI - ARRAY_EXPRESS ]   ICAM3 [ SEEK ]   ICAM3 [ MEM ]
Gene Expression Viewer (FireBrowse)ICAM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3385
GTEX Portal (Tissue expression)ICAM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP32942   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP32942  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP32942
Splice isoforms : SwissVarP32942
PhosPhoSitePlusP32942
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)ICAM    ICAM_N    ICAM_VCAM_N    Ig-like_dom    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)ICAM_N (PF03921)   
Domain families : Pfam (NCBI)pfam03921   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)ICAM3
DMDM Disease mutations3385
Blocks (Seattle)ICAM3
PDB (SRS)1T0P   
PDB (PDBSum)1T0P   
PDB (IMB)1T0P   
PDB (RSDB)1T0P   
Structural Biology KnowledgeBase1T0P   
SCOP (Structural Classification of Proteins)1T0P   
CATH (Classification of proteins structures)1T0P   
SuperfamilyP32942
Human Protein AtlasENSG00000076662
Peptide AtlasP32942
HPRD00889
IPIIPI00031620   IPI00922573   
Protein Interaction databases
DIP (DOE-UCLA)P32942
IntAct (EBI)P32942
FunCoupENSG00000076662
BioGRIDICAM3
STRING (EMBL)ICAM3
ZODIACICAM3
Ontologies - Pathways
QuickGOP32942
Ontology : AmiGOstimulatory C-type lectin receptor signaling pathway  receptor binding  integrin binding  protein binding  plasma membrane  integral component of plasma membrane  phagocytosis  cell adhesion  single organismal cell-cell adhesion  extracellular matrix organization  regulation of immune response  extracellular exosome  
Ontology : EGO-EBIstimulatory C-type lectin receptor signaling pathway  receptor binding  integrin binding  protein binding  plasma membrane  integral component of plasma membrane  phagocytosis  cell adhesion  single organismal cell-cell adhesion  extracellular matrix organization  regulation of immune response  extracellular exosome  
Pathways : KEGGCell adhesion molecules (CAMs)   
NDEx NetworkICAM3
Atlas of Cancer Signalling NetworkICAM3
Wikipedia pathwaysICAM3
Orthology - Evolution
OrthoDB3385
GeneTree (enSembl)ENSG00000076662
Phylogenetic Trees/Animal Genes : TreeFamICAM3
HOVERGENP32942
HOGENOMP32942
Homologs : HomoloGeneICAM3
Homology/Alignments : Family Browser (UCSC)ICAM3
Gene fusions - Rearrangements
Fusion : MitelmanDNMT1/ICAM3 [19p13.2/19p13.2]  [t(19;19)(p13;p13)]  
Fusion: TCGADNMT1 19p13.2 ICAM3 19p13.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerICAM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ICAM3
dbVarICAM3
ClinVarICAM3
1000_GenomesICAM3 
Exome Variant ServerICAM3
ExAC (Exome Aggregation Consortium)ICAM3 (select the gene name)
Genetic variants : HAPMAP3385
Genomic Variants (DGV)ICAM3 [DGVbeta]
DECIPHERICAM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisICAM3 
Mutations
ICGC Data PortalICAM3 
TCGA Data PortalICAM3 
Broad Tumor PortalICAM3
OASIS PortalICAM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICICAM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDICAM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ICAM3
DgiDB (Drug Gene Interaction Database)ICAM3
DoCM (Curated mutations)ICAM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ICAM3 (select a term)
intoGenICAM3
Cancer3DICAM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM146631   
Orphanet
MedgenICAM3
Genetic Testing Registry ICAM3
NextProtP32942 [Medical]
TSGene3385
GENETestsICAM3
Target ValidationICAM3
Huge Navigator ICAM3 [HugePedia]
snp3D : Map Gene to Disease3385
BioCentury BCIQICAM3
ClinGenICAM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3385
Chemical/Pharm GKB GenePA29594
Clinical trialICAM3
Miscellaneous
canSAR (ICR)ICAM3 (select the gene name)
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineICAM3
EVEXICAM3
GoPubMedICAM3
iHOPICAM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:12:38 CEST 2017

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