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IL1RAPL1 (interleukin 1 receptor accessory protein-like 1)

Identity

Other namesIL1R8
IL1RAPL
MRX10
MRX21
MRX34
OPHN4
TIGIRR-2
HGNC (Hugo) IL1RAPL1
LocusID (NCBI) 11141
Location Xp21.3
Location_base_pair Starts at 28605681 and ends at 29974017 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)IL1RAPL1   5996
Cards
Entrez_Gene (NCBI)IL1RAPL1  11141  interleukin 1 receptor accessory protein-like 1
GeneCards (Weizmann)IL1RAPL1
Ensembl (Hinxton) [Gene_View]  chrX:28605681-29974017 [Contig_View]  IL1RAPL1 [Vega]
cBioPortalIL1RAPL1
AceView (NCBI)IL1RAPL1
Genatlas (Paris)IL1RAPL1
WikiGenes11141
SOURCE (Princeton)NM_014271
Genomic and cartography
GoldenPath (UCSC)IL1RAPL1  -  Xp21.3   chrX:28605681-29974017 +  Xp21.3   [Description]    (hg19-Feb_2009)
EnsemblIL1RAPL1 - Xp21.3 [CytoView]
Mapping of homologs : NCBIIL1RAPL1 [Mapview]
OMIM300143   300206   
Gene and transcription
Genbank (Entrez)AB102650 AF181284 AF284435 AJ243874 BC111918
RefSeq transcript (Entrez)NM_014271
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_008292 NT_167197 NW_001842360 NW_004929438
Consensus coding sequences : CCDS (NCBI)IL1RAPL1
Cluster EST : UnigeneHs.658912 [ NCBI ]
CGAP (NCI)Hs.658912
Alternative Splicing : Fast-db (Paris)GSHG0031444
Gene ExpressionIL1RAPL1 [ NCBI-GEO ]     IL1RAPL1 [ SEEK ]   IL1RAPL1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZN1 (Uniprot)
NextProtQ9NZN1  [Medical]
With graphics : InterProQ9NZN1
Splice isoforms : SwissVarQ9NZN1 (Swissvar)
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    TIR (PS50104)   
Domains : Interpro (EBI)Ig-like_dom [organisation]   Ig-like_fold [organisation]   Ig_I-set [organisation]   Ig_sub [organisation]   Ig_sub2 [organisation]   IL-1_rcpt_fam [organisation]   TIR_dom [organisation]  
Related proteins : CluSTrQ9NZN1
Domain families : Pfam (Sanger)I-set (PF07679)    TIR (PF01582)   
Domain families : Pfam (NCBI)pfam07679    pfam01582   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  TIR (SM00255)  
DMDM Disease mutations11141
Blocks (Seattle)Q9NZN1
PDB (SRS)1T3G    4M92   
PDB (PDBSum)1T3G    4M92   
PDB (IMB)1T3G    4M92   
PDB (RSDB)1T3G    4M92   
Peptide AtlasQ9NZN1
HPRD02193
IPIIPI00431738   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZN1
IntAct (EBI)Q9NZN1
BioGRIDIL1RAPL1
InParanoidQ9NZN1
Interologous Interaction database Q9NZN1
IntegromeDBIL1RAPL1
STRING (EMBL)IL1RAPL1
Ontologies - Pathways
Ontology : AmiGOreceptor binding  voltage-gated calcium channel activity  protein binding  cytoplasm  plasma membrane  heterophilic cell-cell adhesion  signal transduction  cell surface  regulation of neuron projection development  integral component of membrane  interleukin-1 binding  neuron differentiation  axon  dendrite  postsynaptic membrane  negative regulation of exocytosis  positive regulation of dendrite morphogenesis  calcium ion transmembrane transport  presynaptic membrane assembly  
Ontology : EGO-EBIreceptor binding  voltage-gated calcium channel activity  protein binding  cytoplasm  plasma membrane  heterophilic cell-cell adhesion  signal transduction  cell surface  regulation of neuron projection development  integral component of membrane  interleukin-1 binding  neuron differentiation  axon  dendrite  postsynaptic membrane  negative regulation of exocytosis  positive regulation of dendrite morphogenesis  calcium ion transmembrane transport  presynaptic membrane assembly  
Protein Interaction DatabaseIL1RAPL1
Wikipedia pathwaysIL1RAPL1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)IL1RAPL1
snp3D : Map Gene to Disease11141
SNP (GeneSNP Utah)IL1RAPL1
SNP : HGBaseIL1RAPL1
Genetic variants : HAPMAPIL1RAPL1
Exome VariantIL1RAPL1
1000_GenomesIL1RAPL1 
Somatic Mutations in Cancer : COSMICIL1RAPL1 
CONAN: Copy Number AnalysisIL1RAPL1 
Mutations and Diseases : HGMDIL1RAPL1
Mutations and Diseases : intOGenIL1RAPL1
Genomic VariantsIL1RAPL1  IL1RAPL1 [DGVbeta]
dbVarIL1RAPL1
ClinVarIL1RAPL1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM300143    300206   
MedgenIL1RAPL1
GENETestsIL1RAPL1
Disease Genetic AssociationIL1RAPL1
Huge Navigator IL1RAPL1 [HugePedia]  IL1RAPL1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneIL1RAPL1
Homology/Alignments : Family Browser (UCSC)IL1RAPL1
Phylogenetic Trees/Animal Genes : TreeFamIL1RAPL1
Chemical/Protein Interactions : CTD11141
Chemical/Pharm GKB GenePA29812
Clinical trialIL1RAPL1
Other databases
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
CoreMineIL1RAPL1
iHOPIL1RAPL1
OncoSearchIL1RAPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:56:40 CEST 2014

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